 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gorai.009G259600.1 |
| Common Name | B456_009G259600, LOC105767744 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
WRKY |
| Protein Properties |
Length: 172aa MW: 19940.5 Da PI: 8.133 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.009G259600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FAR1 | 21.8 | 6.3e-07 | 91 | 153 | 25 | 88 |
FAR1 25 ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88
ei++ ++ k+gk++ +++ + r+ +r gCk k +v++e+ d+++++t+ e +HnHe
Gorai.009G259600.1 91 CLEIMDDGYRWRKYGKKKIKNNP--NPRHYYRCSREGCKVKKRVEREReDEQFVITTYEGKHNHE 153
55677888888899999998777..88999999*************999***************7 PP
|
| 2 | WRKY | 98.6 | 4.1e-31 | 95 | 153 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+dDgy+WrKYG+K++k++++pr+YYrC+ +gC+vkk+ver++ed+++v++tYeg+Hnhe
Gorai.009G259600.1 95 MDDGYRWRKYGKKKIKNNPNPRHYYRCSREGCKVKKRVEREREDEQFVITTYEGKHNHE 153
59********************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 172 aa
Download sequence Send
to blast |
MELNRDDHLD VEDFLVLPHL ETHKEPAATC SSLKAKPSVT LSPVNGSCRD LPSNTLCVDY 60
MLQQNYEGYV VERMEGEDAG KFKVAFRTRS CLEIMDDGYR WRKYGKKKIK NNPNPRHYYR 120
CSREGCKVKK RVEREREDEQ FVITTYEGKH NHENPAAATS LPPHQNPLRY H*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1wj2_A | 8e-26 | 85 | 156 | 7 | 78 | Probable WRKY transcription factor 4 |
| 2ayd_A | 7e-26 | 83 | 157 | 2 | 76 | WRKY transcription factor 1 |
| 2lex_A | 8e-26 | 85 | 156 | 7 | 78 | Probable WRKY transcription factor 4 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KF669816 | 0.0 | KF669816.1 Gossypium hirsutum WRKY transcription factor 77 (WRKY77) mRNA, complete cds. |
