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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Gorai.009G226200.1 |
| Common Name | B456_009G226200, LOC105771378 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
bHLH |
| Protein Properties |
Length: 341aa MW: 38753.9 Da PI: 4.4742 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.009G226200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 32.6 | 1.4e-10 | 174 | 217 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y k+L
Gorai.009G226200.1 174 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILVDTIDYTKEL 217
589*********************66......**************8876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 341 aa
Download sequence Send
to blast |
MELDINEQSF LQELLALRRD NWDTVPPQMN DIFSNGFNFD CFDDASAAAG FLPQSFCQDF 60
SLPLEQDLSF NFDEAYGPFG DEFSAAPQVT DTSSNTFDTL PFPVQDDHRH WMNMVEEEEW 120
GTLVDEINML DPQAPACKVE PIRSPEAPVF NVGSCSVDRN NRAKRLKGQP SKNLMAERRR 180
RKRLNDRLSM LRSIVPKISK MDRTSILVDT IDYTKELLER IKSLQQEMEA GPNELNMSHI 240
FKDVKPNEIL VRKTPKFEVE RRNVDTRIEI CCTGKPGLLL STLTTLEALG LDIQQCVISC 300
FNDFAMQASC AEDLEQRTLI SSEDIKQTLF RNAGYAGRCL *
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 176 | 183 | ERRRRKRL |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Nature, 2012. 492(7429): p. 423-7
[PMID:23257886] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Sharma N, et al.
NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
Development, 2016. 143(4): p. 682-90
[PMID:26758694] - Chen YS, et al.
Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
Plant Mol. Biol., 2017. 93(3): p. 299-311
[PMID:27866313] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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