PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.009G201700.1 | ||||||||
Common Name | B456_009G201700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 187aa MW: 20910.6 Da PI: 8.7591 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.3 | 4.7e-10 | 99 | 145 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+ +l+ +a + ++ +W+ ar +g g+t +++k+++q++ Gorai.009G201700.1 99 SWTPKQNKLFENALVIYDKDtpdRWHNLARAVG-GKTVEEVKLHYQNL 145 7********************************.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.486 | 95 | 150 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-8 | 96 | 148 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.48E-12 | 98 | 154 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.11E-7 | 99 | 146 | No hit | No description |
Pfam | PF00249 | 1.1E-6 | 99 | 145 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MLSTKNNQFQ HIYHEGGQYT FESSASPQSS RSTRQKPTGP PFPTPTFDYL SSPFYIKSTI 60 DSFLIHNLPT VLSPLSCAFV DPCGYRCIVS ATAMASGSSW TPKQNKLFEN ALVIYDKDTP 120 DRWHNLARAV GGKTVEEVKL HYQNLVEDIQ QIESGQVPLP PYKKAGGNKG YNFMDGEQRM 180 KNLRLQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-32 | 91 | 186 | 2 | 93 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016684274.1 | 1e-101 | PREDICTED: transcription factor RADIALIS-like, partial | ||||
Swissprot | Q1A173 | 2e-32 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A0D2QJM4 | 1e-138 | A0A0D2QJM4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G201700.1 | 1e-139 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75250.2 | 9e-35 | RAD-like 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.009G201700.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|