PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G199600.1

Common Name

B456_009G199600, LOC105769036

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 436aa MW: 48047.7 Da PI: 6.9168

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G199600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6.1e-05	322	360	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Gorai.009G199600.1 322 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 360 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.458	310	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.67E-5	320	364	No hit	No description
SuperFamily	SSF47459	4.19E-11	320	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-9	324	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MEPENAHHQH HLQDQLLGSS SSLPISPCYG VSSTHSWTPT TALNSSEFNP SCNGDILHSR 60 LKNDMLVSPQ NSSMIQGWTN NEGSFTTHSC HGLHLPKIKD ELSESITKFT DILSDSTSSV 120 IDSHHLPPPN YLKNNEQRDL SDLSQKLLLK TISSGFPMFS TGPEFYSTTQ NCSIPRNSFL 180 PSRGSFSQIY PSINISSLNQ ASSSPNIPSS FDMNNMEALD LLNPARFSRS SRFSYPSEDH 240 DNLDIYKEIS PSFGLHYHHN LQQSSQRPVA YTPSKTSPFP TEITEAKRPS ILPETKPAAP 300 TTTTAKKSRL ESRASCPPFK VRKEKLGDRI AALQQLVAPF GKTDTASVLM EAIGYIKFLQ 360 NQVETLSVPY MKLSRNKTSK SKQGGSTMED ENEEDEARPD LRSRGLCLVP LSCMSYMTSE 420 SGGGGIWPPP PNFTG*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MEPENAHHQH HLQDQLLGSS SSLPISPCYG VSSTHSWTPT TALNSSEFNP SCNGDILHSR  60
LKNDMLVSPQ NSSMIQGWTN NEGSFTTHSC HGLHLPKIKD ELSESITKFT DILSDSTSSV  120
IDSHHLPPPN YLKNNEQRDL SDLSQKLLLK TISSGFPMFS TGPEFYSTTQ NCSIPRNSFL  180
PSRGSFSQIY PSINISSLNQ ASSSPNIPSS FDMNNMEALD LLNPARFSRS SRFSYPSEDH  240
DNLDIYKEIS PSFGLHYHHN LQQSSQRPVA YTPSKTSPFP TEITEAKRPS ILPETKPAAP  300
TTTTAKKSRL ESRASCPPFK VRKEKLGDRI AALQQLVAPF GKTDTASVLM EAIGYIKFLQ  360
NQVETLSVPY MKLSRNKTSK SKQGGSTMED ENEEDEARPD LRSRGLCLVP LSCMSYMTSE  420
SGGGGIWPPP PNFTG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX586635	1e-135	JX586635.1 Gossypium hirsutum clone NBRI_GE20500 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012444864.1	0.0	PREDICTED: transcription factor bHLH110-like
TrEMBL	A0A0D2QJG8	0.0	A0A0D2QJG8_GOSRA; Uncharacterized protein
STRING	Gorai.009G199600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	7e-78	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G199600.1
Entrez Gene	105769036

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]