PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G175600.1

Common Name

B456_009G175600, LOC105768231

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 406aa MW: 44760.3 Da PI: 8.6048

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G175600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	170	193	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C++Cg+ F+ + ++H + H Gorai.009G175600.1 170 YVCQKCGEIFKKLEAIESHHLStH 193 9******************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.452	170	194	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	172	193	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.73E-16	195	402	No hit	No description
Gene3D	G3DSA:3.90.228.10	4.2E-8	222	375	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MSSAWLTSLK RSVNCKPKLP DVKEPAADDS TEKNSPCLCS SGCSRSLSNL RDVIHGSKRQ 60 ADKAPRIGSP TSIASSEIIN QITHQDVFTD SKCVLEIKTQ CSGNDDGKGG STFVGTLRPG 120 TPGPGERFME PAYNSRRSRK IIAGPSLMRS SCGISSSKPR RSLDFESQRY VCQKCGEIFK 180 KLEAIESHHL STHAVTALSE GDSSKKIVEL ICQTSFLEPE NKFGEIERIL KIHNMQRTLV 240 QFEDYREMVK LKANKLSKKH PRCLADGNEL LRFYGSTVAC SLGMENTSSL CTLDQCEVCQ 300 ILRQGFFSKK EANGCWGVLT SSTSKRAMES VELDKEQHSQ RKALVVCRVI AGRVVKGLEK 360 MREMEGQSSF DSVAGKADCH SNIEELYSLS PRALLPCFIL IICKN*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MSSAWLTSLK RSVNCKPKLP DVKEPAADDS TEKNSPCLCS SGCSRSLSNL RDVIHGSKRQ  60
ADKAPRIGSP TSIASSEIIN QITHQDVFTD SKCVLEIKTQ CSGNDDGKGG STFVGTLRPG  120
TPGPGERFME PAYNSRRSRK IIAGPSLMRS SCGISSSKPR RSLDFESQRY VCQKCGEIFK  180
KLEAIESHHL STHAVTALSE GDSSKKIVEL ICQTSFLEPE NKFGEIERIL KIHNMQRTLV  240
QFEDYREMVK LKANKLSKKH PRCLADGNEL LRFYGSTVAC SLGMENTSSL CTLDQCEVCQ  300
ILRQGFFSKK EANGCWGVLT SSTSKRAMES VELDKEQHSQ RKALVVCRVI AGRVVKGLEK  360
MREMEGQSSF DSVAGKADCH SNIEELYSLS PRALLPCFIL IICKN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012443504.1	0.0	PREDICTED: uncharacterized protein LOC105768231 isoform X2
TrEMBL	A0A0D2QI28	0.0	A0A0D2QI28_GOSRA; Uncharacterized protein
STRING	Gorai.009G175600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25100	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-118	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G175600.1
Entrez Gene	105768231

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]