PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 369aa MW: 40452.4 Da PI: 8.9362

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G112200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.2	9.6e-10	140	189	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 k+ +r ++NR++A+rsR RK +++ e+kv++Le+ L +++++ k+ Gorai.009G112200.1 140 KKLKRVISNRLSAQRSRIRKIQRLCDMEKKVQSLETLVAVLSSKVQREKD 189 899**********************************9999999998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.8E-8	133	186	No hit	No description
SMART	SM00338	3.2E-6	136	207	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	2.1E-7	138	186	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.036	138	201	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.96E-8	140	194	No hit	No description
CDD	cd14703	5.22E-14	141	190	No hit	No description
PROSITE pattern	PS00036	0	143	158	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MNGKNKMIEQ QKPAAGSGSG SSSASAWPKY SIGASAIPTR FSFMKPANLP ICPTSFNGVN 60 PKPYSMNQVG GAGSSAGASS SATKTSFIQG CHSFAVGGEK TNTDKPPMPP VENSARTEAA 120 NVDVAQVRGG HHPEQNMDPK KLKRVISNRL SAQRSRIRKI QRLCDMEKKV QSLETLVAVL 180 SSKVQREKDK HFLLRIEQRE LRERIEAFAN RETMVDARIE KRRAEVESLR QPQFTPQQQQ 240 MQVQTRPVWE QGLPTEQKMN PCPNNSGFGQ AVYANSNQGG GGDGDYMGME INRLNQLSLH 300 QKNPGDVMMP DRQTSGGQLP NVGLDQYGVG ELQNPSLCEP NPQQDGSYDS DIEEIEQILN 360 FDPRNGLL*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MNGKNKMIEQ QKPAAGSGSG SSSASAWPKY SIGASAIPTR FSFMKPANLP ICPTSFNGVN  60
PKPYSMNQVG GAGSSAGASS SATKTSFIQG CHSFAVGGEK TNTDKPPMPP VENSARTEAA  120
NVDVAQVRGG HHPEQNMDPK KLKRVISNRL SAQRSRIRKI QRLCDMEKKV QSLETLVAVL  180
SSKVQREKDK HFLLRIEQRE LRERIEAFAN RETMVDARIE KRRAEVESLR QPQFTPQQQQ  240
MQVQTRPVWE QGLPTEQKMN PCPNNSGFGQ AVYANSNQGG GGDGDYMGME INRLNQLSLH  300
QKNPGDVMMP DRQTSGGQLP NVGLDQYGVG ELQNPSLCEP NPQQDGSYDS DIEEIEQILN  360
FDPRNGLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016684355.1	0.0	PREDICTED: uncharacterized protein LOC107902741
TrEMBL	A0A0D2TNC2	0.0	A0A0D2TNC2_GOSRA; Uncharacterized protein
STRING	Gorai.009G112200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22315	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-12	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G112200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]