PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRF

Protein Properties

Length: 414aa MW: 47825.2 Da PI: 8.4602

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G035200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.2	7.9e-25	77	121	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e Gorai.009G035200.1 77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEV 121 79****************************************985 PP
2	QLQ	53.8	5.8e-19	9	43	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q q+L++Q+l++Ky++++ P+Pp+Ll+ i+ Gorai.009G035200.1 9 PFTASQYQELEHQALIFKYMVSGIPIPPDLLFTIK 43 8******************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	6.5E-10	8	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.7E-14	9	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.104	9	44	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.98	77	121	IPR014977	WRC domain
Pfam	PF08879	1.5E-20	78	120	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MMSGRNRFPF TASQYQELEH QALIFKYMVS GIPIPPDLLF TIKRSCLDTS LSSRLFSYQP 60 QHIGWNCFQM GLGRKVDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GKNRSRKPVE 120 VSNATMANPS TATQNIQSIT KTHHPSSFSS HSSMSLSSES QQQHQLRYHG YHSQANHPFM 180 YPHASRPPGV GLSPQENTTH SLLGSGSYSQ TNMDYRRNSY VYGLKEEVDE HAFFSEPSGT 240 MRSFSGSSVD DSWQLAPLTM SSSSSKQRNC SGLQSEYSYL QLQSLTDHNP KQNKQDDDEH 300 SYIKYEMTDE LEKGEPQKTV HRFFDEWPPK HRDSWLDLDD KSSNSSSVST TRLSISIPST 360 SHDFPIFNSR AHNGNLFFLF SFCIYNLRHL TRFIFWPEIY SYCFNCRWLN VQW*

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MMSGRNRFPF TASQYQELEH QALIFKYMVS GIPIPPDLLF TIKRSCLDTS LSSRLFSYQP  60
QHIGWNCFQM GLGRKVDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GKNRSRKPVE  120
VSNATMANPS TATQNIQSIT KTHHPSSFSS HSSMSLSSES QQQHQLRYHG YHSQANHPFM  180
YPHASRPPGV GLSPQENTTH SLLGSGSYSQ TNMDYRRNSY VYGLKEEVDE HAFFSEPSGT  240
MRSFSGSSVD DSWQLAPLTM SSSSSKQRNC SGLQSEYSYL QLQSLTDHNP KQNKQDDDEH  300
SYIKYEMTDE LEKGEPQKTV HRFFDEWPPK HRDSWLDLDD KSSNSSSVST TRLSISIPST  360
SHDFPIFNSR AHNGNLFFLF SFCIYNLRHL TRFIFWPEIY SYCFNCRWLN VQW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447347.1	0.0	PREDICTED: growth-regulating factor 1-like isoform X1
TrEMBL	A0A0D2TIQ4	0.0	A0A0D2TIQ4_GOSRA; Uncharacterized protein
STRING	Gorai.009G035200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4567	26	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	6e-56	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Gorai.009G035200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]