PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G020300.1
Common NameB456_009G020300, LOC105766746
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 339aa    MW: 38910 Da    PI: 8.7153
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G020300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.72.1e-114392156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        s+ykGV + k +g+W A+++       + +r++lg+f ++ +Aa a++ a+ k++ e
  Gorai.009G020300.1 43 SQYKGVMRQK-NGQWGAQLYA------NhTRIWLGTFKSEIDAAMAYDSAAIKFRTE 92
                        78****8676.8******887......34**********99***********99875 PP
2B380.61.6e-25162258183
                         EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                         f+k+ltpsdv+k++rlv+pkk+a ++              g  k+++++l+++d+  r W+v+++y+++s+++v+t+GW++F k+++Lk++
  Gorai.009G020300.1 162 FQKELTPSDVGKLNRLVIPKKYAVKYfspvfgtenenadvGDRKTNDVELVFYDKFMRIWKVRYCYWNSSQSFVFTRGWNRFLKEKELKAK 252
                         99***********************************99988999********************************************** PP

                         -EEEEE CS
                  B3  78 DfvvFk 83 
                         D+v F 
  Gorai.009G020300.1 253 DVVSFF 258
                         ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-74391IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1543101IPR016177DNA-binding domain
CDDcd000181.59E-2143101No hitNo description
SMARTSM003802.7E-1844105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-174499IPR001471AP2/ERF domain
PROSITE profilePS5103217.4774499IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.8E-29158271IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-24161263IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-21161257No hitNo description
SMARTSM010199.5E-19162277IPR003340B3 DNA binding domain
PfamPF023622.2E-22162258IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041162277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEEEITSVIL SGEANTHSDV SDSTSTTHQA NKRQRCGGKG NSSQYKGVMR QKNGQWGAQL  60
YANHTRIWLG TFKSEIDAAM AYDSAAIKFR TEDTHRNFPW NEITIEEPKF LSHYSVEIVL  120
SMIRDGSYQY KFMDFIKAHS RNTKLNLVGT YSNEGLICKQ LFQKELTPSD VGKLNRLVIP  180
KKYAVKYFSP VFGTENENAD VGDRKTNDVE LVFYDKFMRI WKVRYCYWNS SQSFVFTRGW  240
NRFLKEKELK AKDVVSFFVC ECRKENDVQR FCMIDANKSG NGGTFVAENN VHVGIEVDLQ  300
LRLGHSYLVQ EEQRSMAAAK PKQDDKTEGF KLFGMQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-2615825710100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147526e-57JX614752.1 Gossypium hirsutum clone NBRI_GE58377 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441778.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P55e-95RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0D2THR60.0A0A0D2THR6_GOSRA; Uncharacterized protein
STRINGGorai.009G020300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15647617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.14e-97RAV family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]