PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G243000.1
Common NameB456_008G243000, LOC105765183
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 389aa    MW: 41371.5 Da    PI: 8.7407
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G243000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.62.7e-3586188295
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssas 83 
                         ++k++ ++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++         ++++ + s++
  Gorai.008G243000.1  86 TAKRSYNKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEHAIIEATGTGTVPAIAVsvggtlkipTTSATNTSNN 176
                         678999**********************************************************666663333333322111111111222 PP

                 TCP  84 nsssgkaaksaa 95 
                         ns+++++ k+ +
  Gorai.008G243000.1 177 NSQIDDKTKKRK 188
                         222221111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.43692146IPR017887Transcription factor TCP subgroup
PfamPF036345.4E-2992187IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDPSEDGGTS DLSTSTGGPN NATPTAANSI KNDENCENSA LMVMPLKEEP IEPDPDRKTH  60
PPRPTRVVPV SGQMSMQIPI PTPVTTAKRS YNKDRHTKVE GRGRRIRIPA TCAARIFQLT  120
RELGHKSDGE TVRWLLEHAE HAIIEATGTG TVPAIAVSVG GTLKIPTTSA TNTSNNNSQI  180
DDKTKKRKRP ASSEFCDVND GIPIAVAQQQ QQQQRLVTQY SGLAPVAQQA LVPVWAVGNT  240
GMMVPANAFW MIPQSTPTAS GDWLTNQRPP PQLWAFSPAL TSVCNIAARP TSSFVATTTE  300
TQAVVCDGVS TLAVSTSSTP VGATEAKKST MAPSVSSGGN GGGGTGGTAQ MLRDFSLEIY  360
DKQELQLMGR SWNHHQQQIK AASKQKNP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272251e-169HQ527225.1 Gossypium herbaceum clone NBRI_B_2245 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439606.10.0PREDICTED: transcription factor TCP19-like
SwissprotO646472e-59TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A0D2Q1350.0A0A0D2Q135_GOSRA; Uncharacterized protein
STRINGGorai.008G243000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17337611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-58TCP family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]