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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.008G225200.1 |
| Common Name | B456_008G225200, LOC105764992 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
HSF |
| Protein Properties |
Length: 512aa MW: 56120.4 Da PI: 4.7482 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.008G225200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 114.9 | 5e-36 | 45 | 136 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92
Fl+k+y++++d++++ ++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+
Gorai.008G225200.1 45 FLSKTYDMVDDPATDAIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 126
9********************999*****************************************999.........************** PP
XXXXXXXXXX CS
HSF_DNA-bind 93 llekikrkks 102
ll++i r+k
Gorai.008G225200.1 127 LLRNISRRKP 136
*******986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009408 | Biological Process | response to heat |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 512 aa
Download sequence Send
to blast |
MDGVSSSSNN QTDASTSGGG TQTATQPLPM PQPVAGHSAN GPPPFLSKTY DMVDDPATDA 60
IVSWSPTNNS FVVWNPPEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKVDP DRWEFANEGF 120
LRGQKHLLRN ISRRKPAHGH GHQQTQQPHG QSSSMGACVE VGKFGLEEEV ERLKRDKNVL 180
MQELVRLRQQ QQTTDNQLQN MVQRLQGMEQ RQQQMMSFLA KAVQNPSFFA QFVHQQNESN 240
RRISETNKKR RLKQDGIIGE DHSTASDGQI VKYQPLMNDA KAMLMQMMKG DASPRLDSFN 300
NSNEHTLIGD GSLSSSGLDG GNSSSRVSGV TLQEVSPTSG ISGHCPSAAI SEIQSSPCTT 360
SSERITTAEL PDVSALIGAE KPPSVSVTQT DIIMPDLSQI SEMVPESIVD IPTEMGNDGL 420
IDPDTLAVNG LLSIELDDIG SDPDIDALLV NSPFFHDLFP SPVCEEIEST SMEGKSKENE 480
GQAMDDGWDK SQHMDKLTEQ MGLLRSENKG I*
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| Nucleic Localization
Signal ? help
Back to Top |
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| No. |
Start |
End |
Sequence |
| 1 | 246 | 253 | NKKRRLKQ |
| 2 | 247 | 252 | KKRRLK |
| Functional Description ? help
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| Source |
Description |
| UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
| Publications
? help Back to Top |
- Zhu B, et al.
Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
J. Plant Res., 2006. 119(3): p. 247-56
[PMID:16570125] - Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Nature, 2012. 492(7429): p. 423-7
[PMID:23257886] - Cai SY, et al.
HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
J. Pineal Res., 2017.
[PMID:28095626] - Zhou J, et al.
Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
Plant Physiol., 2018. 176(3): p. 2456-2471
[PMID:29339397]
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