PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 270aa MW: 29158.4 Da PI: 9.6675

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G123200.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	73.7	2.6e-23	150	212	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l+++++kl+ e+ Gorai.008G123200.5 150 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENTTLRSEINQLTEKSEKLRLEN 212 89*********************************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16596	6.1E-20	18	134	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-18	144	209	No hit	No description
SMART	SM00338	2.2E-22	150	214	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-21	150	212	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.748	152	215	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.94E-11	153	209	No hit	No description
CDD	cd14702	6.59E-19	155	204	No hit	No description
PROSITE pattern	PS00036	0	157	172	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MQAAPETPTK FSGNTNGGLM KKLKGFDGLA MSIGNSTAEN AESGAEPRPS QSAETEGSTD 60 DSDGNTTGAD QTRWKRSREG TPAIGVEGNN EARSKPVAAR EATATISPKP VGSVLPSGMT 120 TSLELSNPPA KSSPTNVPRV MTSEIWLQNE RELKRERRKQ SNRESARRSR LRKQAETEEL 180 ARKVESLTAE NTTLRSEINQ LTEKSEKLRL ENATLVEGLK NGELGYAKDI IMNKKADKEG 240 EMYEKKSNSG AKLHQLFDPS PRADAVAAS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	166	172	RRSRLRK
2	166	173	RRSRLRKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269\|PubMed:8672884}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8672884}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00318	DAP	Transfer from AT2G46270	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437735.1	0.0	PREDICTED: G-box-binding factor 3-like isoform X2
Swissprot	P42776	5e-71	GBF3_ARATH; G-box-binding factor 3
TrEMBL	A0A0D2RE89	0.0	A0A0D2RE89_GOSRA; Uncharacterized protein
STRING	Gorai.008G123200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	2e-73	G-box binding factor 3

Link Out ? help Back to Top
Phytozome	Gorai.008G123200.5

Publications ? help Back to Top
Obayashi T, et al. ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res., 2007. 35(Database issue): p. D863-9 [PMID:17130150] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Ramegowda V, et al. GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 9148 [PMID:28831141]