PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G123200.1 | ||||||||
Common Name | B456_008G123200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 372aa MW: 39973.4 Da PI: 9.2471 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 73 | 4.4e-23 | 252 | 314 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN++L++e+++l+++++kl+ e+ Gorai.008G123200.1 252 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTAENTTLRSEINQLTEKSEKLRLEN 314 89*********************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 5.2E-33 | 2 | 90 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 3.6E-19 | 119 | 236 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.3E-18 | 246 | 311 | No hit | No description |
SMART | SM00338 | 2.2E-22 | 252 | 316 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.4E-21 | 252 | 314 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.748 | 254 | 317 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.31E-11 | 255 | 311 | No hit | No description |
CDD | cd14702 | 9.45E-23 | 257 | 306 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 259 | 274 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
DEGKSSKSDK SSSPAPPDQT NIHVYPDWAA MQAYYGPRVP MPPYYNSAVA SGHAPPPYMW 60 GPTQAIMPPY GTPYATIYPH GGVYVHPTVP MGSHGHGVPS SPKAAPETPT KFSGNTNGGL 120 MKKLKGFDGL AMSIGNSTAE NAESGAEPRP SQSAETEGST DDSDGNTTGA DQTRWKRSRE 180 GTPAIAGVEG NNEARSKPVA AREATATISP KPVGSVLPSG MTTSLELSNP PAKSSPTNVP 240 RVMTSEIWLQ NERELKRERR KQSNRESARR SRLRKQAETE ELARKVESLT AENTTLRSEI 300 NQLTEKSEKL RLENATLVEG LKNGELGYAK DIIMNKKADK EGEMYEKKSN SGAKLHQLFD 360 PSPRADAVAA S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 268 | 274 | RRSRLRK |
2 | 268 | 275 | RRSRLRKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269|PubMed:8672884}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016735514.1 | 0.0 | PREDICTED: G-box-binding factor 3-like isoform X1 | ||||
Swissprot | P42776 | 1e-126 | GBF3_ARATH; G-box-binding factor 3 | ||||
TrEMBL | A0A0D2U207 | 0.0 | A0A0D2U207_GOSRA; Uncharacterized protein (Fragment) | ||||
STRING | Gorai.008G123200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3571 | 26 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 1e-125 | G-box binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G123200.1 |
Publications ? help Back to Top | |||
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