PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G092000.1
Common NameB456_008G092000, LOC105763549
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 232aa    MW: 26132.2 Da    PI: 8.3862
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G092000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1054.7e-3347102359
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                         k rY+eClkNhA+ +GghavDGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e+e 
  Gorai.008G092000.1  47 KRRYRECLKNHAVGIGGHAVDGCGEFMPA-GTEGTLDALKCAACNCHRNFHRKETEP 102
                         679*************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015663.2E-304999IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2349101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.0E-2949100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.4535099IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.5E-29155230IPR009057Homeodomain-like
SuperFamilySSF466891.25E-17156229IPR009057Homeodomain-like
TIGRFAMsTIGR015657.2E-25168224IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEFEEQEEEM GLAPSYNSLV NSTAVKMSDA EPGSITPTGQ QQQQQRKRRY RECLKNHAVG  60
IGGHAVDGCG EFMPAGTEGT LDALKCAACN CHRNFHRKET EPNSPNTFPS TDLYFHQPTQ  120
FTPYFRAPTG YLHVAGQQRL LALPSTSGGG GGHSREDQED VSNQGSSRKR FRTKFTHDQK  180
EKMLELAERI GWRIQKHDEL LVQQFCNENG VKRQVFKVWM HNNKHTLGKK P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-261692261875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437238.11e-176PREDICTED: zinc-finger homeodomain protein 2-like
SwissprotA2Z2593e-75ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A0D2T2Y41e-175A0A0D2T2Y4_GOSRA; Uncharacterized protein
STRINGGorai.008G092000.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45052454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-72homeobox protein 22
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]