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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G092000.1 | ||||||||
Common Name | B456_008G092000, LOC105763549 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 232aa MW: 26132.2 Da PI: 8.3862 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105 | 4.7e-33 | 47 | 102 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k rY+eClkNhA+ +GghavDGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e+e Gorai.008G092000.1 47 KRRYRECLKNHAVGIGGHAVDGCGEFMPA-GTEGTLDALKCAACNCHRNFHRKETEP 102 679*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 3.2E-30 | 49 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-23 | 49 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.0E-29 | 49 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.453 | 50 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-29 | 155 | 230 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-17 | 156 | 229 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.2E-25 | 168 | 224 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEFEEQEEEM GLAPSYNSLV NSTAVKMSDA EPGSITPTGQ QQQQQRKRRY RECLKNHAVG 60 IGGHAVDGCG EFMPAGTEGT LDALKCAACN CHRNFHRKET EPNSPNTFPS TDLYFHQPTQ 120 FTPYFRAPTG YLHVAGQQRL LALPSTSGGG GGHSREDQED VSNQGSSRKR FRTKFTHDQK 180 EKMLELAERI GWRIQKHDEL LVQQFCNENG VKRQVFKVWM HNNKHTLGKK P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-26 | 169 | 226 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012437238.1 | 1e-176 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
Swissprot | A2Z259 | 3e-75 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A0D2T2Y4 | 1e-175 | A0A0D2T2Y4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G092000.1 | 1e-175 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4505 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 1e-72 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G092000.1 |
Entrez Gene | 105763549 |
Publications ? help Back to Top | |||
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