PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G071200.4
Common NameB456_008G071200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 622aa    MW: 70870.5 Da    PI: 8.2163
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G071200.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.2e-16281111099
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         + + + l +p kf++++g+    s  + l+ +sg +W v+l  +k++g ++l++GW+eF +   Lk g  +vFk++g+ +f  +v +f++
  Gorai.008G071200.4  28 NIRDKKLEIPGKFVRKYGNG--LSNSVLLTVPSGDTWHVEL--TKSDGIVWLQNGWQEFSEYFSLKYGHLLVFKYEGNGKF--LVLIFDT 111
                         3445669**********855..7788***************..********************************998777..****997 PP
2B352.68e-17343440197
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+ ++ ps+ +  + +++pk+f+ ++         +ltl +++gr+W+ ++     r+k  + ++  GW++F  +n+L++gD++vF+l+++
  Gorai.008G071200.4 343 FLVTMQPSYINPGRKMCIPKNFTMKFlT-R--DLGDLTLCTSDGRTWSAQYLCymtRNKYTKATIHIGWRQFMLDNNLEAGDVCVFELISQ 430
                         667788888888899********88842.2..2338***************4448877778899************************987 PP

                         SEE..EEEEE CS
                  B3  88 sefelvvkvf 97 
                         +e  l+v ++
  Gorai.008G071200.4 431 TEIMLKVIIY 440
                         6666666655 PP
3B359.46.4e-19505603298
                         EEE-...-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3   2 fkvlt.psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                         fkv + p + + ++ l++p kf++++  +  e+ + +l+ ++gr+W vk+ +   ++++ +  ++  W+ F+++n+L++gD++vF+l++r+
  Gorai.008G071200.4 505 FKVVMqPRYLTIRCSLSIPYKFVNQYLDE--EKEEAILQVSDGRTWVVKFAVkvvTGGQHKAEFSHTWRAFARDNNLEVGDVCVFELINRN 593
                         5555505555566**********999433..23479**************77766666666889999*********************998 PP

                         EE..EEEEE- CS
                  B3  89 efelvvkvfr 98 
                         e +++v++f+
  Gorai.008G071200.4 594 ENSFKVSIFS 603
                         8889***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-2511112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-2413112IPR015300DNA-binding pseudobarrel domain
CDDcd100173.24E-1918110No hitNo description
PROSITE profilePS5086314.15619112IPR003340B3 DNA binding domain
SMARTSM010193.0E-1520112IPR003340B3 DNA binding domain
PfamPF023622.6E-1328111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-21335440IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-21336441IPR015300DNA-binding pseudobarrel domain
CDDcd100172.97E-19341441No hitNo description
PfamPF023622.5E-15343441IPR003340B3 DNA binding domain
SMARTSM010191.1E-10343443IPR003340B3 DNA binding domain
PROSITE profilePS5086313.38343443IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-23496603IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-22498603IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-22503603No hitNo description
PfamPF023626.2E-17504604IPR003340B3 DNA binding domain
SMARTSM010192.9E-12505605IPR003340B3 DNA binding domain
PROSITE profilePS5086314.522505605IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MPKSLKENNN SMFTPKTPHF FKIILDANIR DKKLEIPGKF VRKYGNGLSN SVLLTVPSGD  60
TWHVELTKSD GIVWLQNGWQ EFSEYFSLKY GHLLVFKYEG NGKFLVLIFD TSASEIEYPC  120
KSHIEDQESD DQMCLKPVKE EPKDDVCDKP LHGTPSCKET KRKKSRSLCS NAEYLCKSYI  180
DDHKSDDQLC LKPVKEEAKD GVYDETLYET PPCKKARRTK SQSQCSKIEY PCKSHIEDHK  240
SEDQVSLKPV KEEAKDDVCD KTLYETPPCK ETRKKKPQSQ CSKPRKKLKT AQKDKNRKDC  300
EDASTDEEGL QTKVPRDGRA FGAIEYDKAL QRAFSFESEN PFFLVTMQPS YINPGRKMCI  360
PKNFTMKFLT RDLGDLTLCT SDGRTWSAQY LCYMTRNKYT KATIHIGWRQ FMLDNNLEAG  420
DVCVFELISQ TEIMLKVIIY RVRQDASCSS PLGGINSLEN GDNVSSSTPG STESKHHCSI  480
RSLTPHEKAR AIQKASNFKS KNPFFKVVMQ PRYLTIRCSL SIPYKFVNQY LDEEKEEAIL  540
QVSDGRTWVV KFAVKVVTGG QHKAEFSHTW RAFARDNNLE VGDVCVFELI NRNENSFKVS  600
IFSEAPGANS SLSPQGLYES I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1831960225144B3 domain-containing transcription factor VRN1
4i1k_B4e-1831960225144B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283289PRKKLKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6167622e-58JX616762.1 Gossypium hirsutum clone NBRI_GE61640 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436967.10.0PREDICTED: uncharacterized protein LOC105763317 isoform X1
TrEMBLA0A0D2TYU40.0A0A0D2TYU4_GOSRA; Uncharacterized protein
STRINGGorai.008G071200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-29B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]