PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G027200.1
Common NameB456_008G027200, LOC105762842
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 375aa    MW: 42111.4 Da    PI: 7.4033
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G027200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.56.1e-082452911763
                         HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         A+rsR RK+++i+eLe+ v++L+ae ++   ele l+++   l +e+
  Gorai.008G027200.1 245 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILNMEN 291
                         89************************************998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.8E-4234293IPR004827Basic-leucine zipper domain
CDDcd147032.33E-15237284No hitNo description
SuperFamilySSF579597.74E-6245287No hitNo description
Gene3DG3DSA:1.20.5.1706.1E-8245287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MANSKGSTNI RDSIYAGKHA LLPPKCPFPT VSQPFTDYVS NNVIGLVQNP REGNTHHMRT  60
SSESFLIEDQ PSWLDDLLNE PDITPMRRGG HRRSSSDSFA YIDVSNARNL DYAAQEEYRY  120
KNMISAPSWA SLEFDYHSKT DAQLAAFYND VNLVKQKNRP WDSSLNAVTH SSGLPSRREN  180
SILQGSGSSC ALKEVESAPS TASEKQDSAE SSSLEAKVYS EKKDNSYAKS SSSDSDTKRA  240
KQQFAQRSRV RKLQYIAELE RNVQALQAEG SEVSAELEFL NQQNLILNME NKALKQRLES  300
LAQEQLIKHL EHEVLEREIG RLRVLYQQQQ QQQQQHQKQK PSSSSSSSHR PSSSRDLDSQ  360
FANLSLKHKD ANSG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1478886e-82EF147888.1 Populus trichocarpa clone WS0125_L14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436226.10.0PREDICTED: uncharacterized protein At4g06598-like
RefseqXP_012436227.10.0PREDICTED: uncharacterized protein At4g06598-like
RefseqXP_012436228.10.0PREDICTED: uncharacterized protein At4g06598-like
RefseqXP_012436229.10.0PREDICTED: uncharacterized protein At4g06598-like
SwissprotQ8W3M79e-70Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBLA0A0D2SZB40.0A0A0D2SZB4_GOSRA; Uncharacterized protein
STRINGGorai.008G027200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33602444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-101bZIP family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]