PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 348aa MW: 38066.5 Da PI: 8.9454

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G362000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.9	5.2e-42	75	151	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegCe+dls++k y+ rhkvC +hsk+p+++v+g+eqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk++ Gorai.007G362000.1 75 RCQVEGCEVDLSDVKAYYARHKVCVTHSKSPKAIVAGIEQRFCQQCSRFHQLPEFDKAKRSCRRRLAGHNERRRKPS 151 6**************************************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.1E-33	70	137	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.744	73	150	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.32E-40	74	154	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.6E-32	76	149	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MEMGSSSLSD SGGSSIDSLN NNALKLGRNI YFNDSSAAVN GGPATMKTQS PPTQPPLGCK 60 KPRVGGMIHG GRPPRCQVEG CEVDLSDVKA YYARHKVCVT HSKSPKAIVA GIEQRFCQQC 120 SRFHQLPEFD KAKRSCRRRL AGHNERRRKP SPGSLFPSHY SRLSSSVIES NGRGRSFILD 180 FTAYSRVSGK DAWPTMRSLD RIPGNQNTAP EKSLQHHHPW PKNMENPSSG DLFLQGSLGG 240 TGFSGTATSQ GECFTGVSDS SCALSLLSNQ PWGSKNRASA LGVNDMMNTE PMPHDTFVNP 300 YLQTSEPADA QHFGRLELPQ QNSVQHMELE QHSRSYDTSA QYIHWSL*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MEMGSSSLSD SGGSSIDSLN NNALKLGRNI YFNDSSAAVN GGPATMKTQS PPTQPPLGCK  60
KPRVGGMIHG GRPPRCQVEG CEVDLSDVKA YYARHKVCVT HSKSPKAIVA GIEQRFCQQC  120
SRFHQLPEFD KAKRSCRRRL AGHNERRRKP SPGSLFPSHY SRLSSSVIES NGRGRSFILD  180
FTAYSRVSGK DAWPTMRSLD RIPGNQNTAP EKSLQHHHPW PKNMENPSSG DLFLQGSLGG  240
TGFSGTATSQ GECFTGVSDS SCALSLLSNQ PWGSKNRASA LGVNDMMNTE PMPHDTFVNP  300
YLQTSEPADA QHFGRLELPQ QNSVQHMELE QHSRSYDTSA QYIHWSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-29	76	149	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269\|PubMed:16861571}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622323	0.0	KJ622323.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL15) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434994.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Swissprot	A3C057	5e-60	SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBL	A0A0D2SWB2	0.0	A0A0D2SWB2_GOSRA; Uncharacterized protein
STRING	Gorai.007G362000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2144	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	1e-56	squamosa promoter binding protein-like 9

Link Out ? help Back to Top
Phytozome	Gorai.007G362000.1
Entrez Gene	105761667

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]