PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G243200.1
Common NameB456_007G243200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 421aa    MW: 47582.6 Da    PI: 8.3603
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G243200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.51e-11133173444
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                         +k +rr+++NReAAr+sR+RKka++++Le+   +L +  ++
  Gorai.007G243200.1 133 DKIQRRLAQNREAARKSRLRKKAYVQQLENSRLKLIQLEQE 173
                         689**************************976666655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-7129179No hitNo description
SMARTSM003381.8E-8130193IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.875132176IPR004827Basic-leucine zipper domain
PfamPF001705.0E-8134166IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-7134176No hitNo description
CDDcd147081.38E-22134186No hitNo description
PROSITE patternPS000360137152IPR004827Basic-leucine zipper domain
PfamPF141445.6E-29220295IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MMHHFEHAFC SYKYCLTKQN IKFSLDPIWF VLHSKLSIAL DINSTCAKVA FVIISKSMNS  60
PTPQFVPSRL SIYEPIHQIG IWGENFKRNG NPNTSTSLIV EVDNKLENES ETTSHEMLAP  120
TNNYEQEASK PIDKIQRRLA QNREAARKSR LRKKAYVQQL ENSRLKLIQL EQELQRATQQ  180
GLYMGGVLEG SHIGFSGTVN SGIAAFEMEY GRWVDVQHRQ ICELRTALNA HISDIELRIL  240
VKSGMGHYFE LFRMKSTVAK ADVFYVISGV WKTSAERFFS WIGGFRPSEL LKVLVPQLDP  300
LTEQQILEVC NLKQSCQQAE DALSQGLEKL QETVSSTVAG GPVAEVSYIP QVATAMEKLE  360
ALVSFVNQAD HLRQETLQQM SRILTTRQAA RGLLALGEYF HRLRALSTLW VTRPPEPSLP  420
*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492248.10.0PREDICTED: transcription factor TGA1-like isoform X2
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A0D2PEC40.0A0A0D2PEC4_GOSRA; Uncharacterized protein
STRINGGorai.007G243200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  5. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  6. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]