PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G202300.1 | ||||||||
Common Name | B456_007G202300, LOC105803790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 84aa MW: 9366.38 Da PI: 9.3992 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.7 | 6.1e-09 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ + + +a +++ + +W Ia+ +g g++++++k ++ Gorai.007G202300.1 15 SWTPKQNKMFEKALAKYDQDtpdRWINIAKAVG-GKSAEEVKQHY 58 7******************9*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.931 | 11 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-7 | 12 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.25E-14 | 14 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-5 | 15 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-7 | 15 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.48E-7 | 16 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MASHSLSSSR SSNSSWTPKQ NKMFEKALAK YDQDTPDRWI NIAKAVGGKS AEEVKQHYEI 60 LVRDVKEIES GRYPYPYPSG SSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-28 | 6 | 76 | 1 | 71 | RADIALIS |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012491645.1 | 9e-56 | PREDICTED: protein RADIALIS-like 3 | ||||
Refseq | XP_016697012.1 | 9e-56 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 8e-33 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A0D2TIF7 | 2e-54 | A0A0D2TIF7_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8K3G9 | 2e-54 | A0A1U8K3G9_GOSHI; protein RADIALIS-like 3 | ||||
STRING | Gorai.007G202300.1 | 3e-55 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 5e-30 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G202300.1 |
Entrez Gene | 105803790 |
Publications ? help Back to Top | |||
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