PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G196900.1
Common NameB456_007G196900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 200aa    MW: 21939.2 Da    PI: 7.1553
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G196900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.71e-07333434
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                        ++C+ +e+  ++ fC  ++  lC  C ++ H
  Gorai.007G196900.1  3 TICDACESAAAIVFCAADEAALCSACDEKVH 33
                        69**************************998 PP
2zf-B_box26.61.2e-085291237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                        + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Gorai.007G196900.1 52 DVPRCDICENAPAFFYCEIDGTSLCLQCDMIVHVGgkrtH 91
                        5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.0E-7147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.182147IPR000315B-box-type zinc finger
PfamPF006435.8E-6334IPR000315B-box-type zinc finger
CDDcd000211.47E-5345No hitNo description
SuperFamilySSF578455.72E-54887No hitNo description
PROSITE profilePS501198.835196IPR000315B-box-type zinc finger
SMARTSM003363.1E-105196IPR000315B-box-type zinc finger
PfamPF006431.1E-65285IPR000315B-box-type zinc finger
CDDcd000211.60E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRTICDACES AAAIVFCAAD EAALCSACDE KVHLCNKLAS RHVRVGLANP SDVPRCDICE  60
NAPAFFYCEI DGTSLCLQCD MIVHVGGKRT HGRYLVLRQR VEFPGYKPGN IEDPASQPLD  120
PSETMRGQNH AAKRTVGENQ QNDKACPVLR MDANADGHLE TGTKMIDLNM KPHRIHGQAS  180
NNQVRALLLC KFLLFFHCI*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491584.11e-135PREDICTED: B-box zinc finger protein 18-like isoform X1
SwissprotC0SVM51e-69BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0D2QW121e-146A0A0D2QW12_GOSRA; Uncharacterized protein
STRINGGorai.007G196900.11e-147(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-72DBB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]