PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G139600.1
Common NameB456_007G139600, LOC105803136
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 346aa    MW: 39858.5 Da    PI: 4.9976
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G139600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35441362103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k++++++d++++ ++sws+ g+sf+v+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+k+++++         weF+++ F +g+++
  Gorai.007G139600.1  44 FLTKTFDMVDDPSTNYIVSWSSGGSSFIVWDPHSFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDSDR---------WEFANEGFVRGQRD 125
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Gorai.007G139600.1 126 LLKSIRRRKTT 136
                         ********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.22E-3439133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-6040133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.7E-3840133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-3244133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-204467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.0E-2095107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MNPYFPVKEE YPSSSYSQSD DDAPRMMEPP QPVEGLHDSG PPPFLTKTFD MVDDPSTNYI  60
VSWSSGGSSF IVWDPHSFST NLLPRYFKHN NFSSFVRQLN TYGFRKIDSD RWEFANEGFV  120
RGQRDLLKSI RRRKTTTSQL PTSQQALGPC VEVGRFGLDG EVDRLRSDNQ VLMMELVTLR  180
QQQLSTRAYI QAIEERLQCT EKKQQQMMSF LARAMQNPSF LQQLMQQKER TKDLEEAMSR  240
KRMRPIDQRP LAVDVGESSR GSDGTNPVKI KTLEFGDYGY QVTELEALAL EMQGYGRTRR  300
GQEESQNGHD HRESHDKELD EGFWEELLNE KFLELDIPGT ELARD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-263913815125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674040.0KR067404.1 Gossypium hirsutum HSF23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490602.10.0PREDICTED: heat stress transcription factor A-6b-like isoform X1
RefseqXP_012490603.10.0PREDICTED: heat stress transcription factor A-6b-like isoform X1
RefseqXP_012490604.10.0PREDICTED: heat stress transcription factor A-6b-like isoform X1
RefseqXP_012490605.10.0PREDICTED: heat stress transcription factor A-6b-like isoform X1
SwissprotQ9LUH81e-120HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0D2SCW60.0A0A0D2SCW6_GOSRA; Uncharacterized protein
STRINGGorai.007G139600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-122heat shock transcription factor A6B
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]