PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G242400.1
Common NameB456_006G242400, LOC105800546
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 341aa    MW: 39350.3 Da    PI: 5.6743
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G242400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.19.2e-36431352103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y+i++d+ ++++isws  +nsf+v+d++ f+  +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++
  Gorai.006G242400.1  43 FLTKTYDIIDDSGTNHIISWSGGNNSFIVWDPQAFSMILLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEKFLRGQRH 124
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Gorai.006G242400.1 125 LLKTIRRRKTQ 135
                         ********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.2E-3837127IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.13E-3539132IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5839132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-194366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3043132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-1994106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MNPYERIKQE FQGTSSSSYH GDILSMATPQ PIEGLHEGGP PPFLTKTYDI IDDSGTNHII  60
SWSGGNNSFI VWDPQAFSMI LLPRYFKHNN FSSFVRQLNT YGFRKVDPDR WEFANEKFLR  120
GQRHLLKTIR RRKTQQVQAS YGGLDPCVEV GRFGVDVDID RLKRDKQVLM AELVKLRQQQ  180
HNTKTYLQVM EERLKKTEMK QQQMMSFLAK AMQNPNFVQQ LIQQKDKRKE LEEAITNKRR  240
RRIDNHNQTF VKAEPVESFG GAFEVVELDE IAMDLQEKHD EEHGSCYDKG KRIDDGGFWN  300
DLLNDDMEEE ISALQANGVE DEEGIDVLVE QLGFLGSSPK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-233813412122Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226241KRKELEEAITNKRRRR
2237242KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7486220.0KJ748622.1 Gossypium hirsutum HSF19 (HSF19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487197.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ9LUH81e-124HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0D2T3K00.0A0A0D2T3K0_GOSRA; Uncharacterized protein
STRINGGorai.006G242400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-127heat shock transcription factor A6B
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]