PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.006G085000.1

Common Name

B456_006G085000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 351aa MW: 38511.7 Da PI: 7.2205

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G085000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.2e-05	239	276	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L Gorai.006G085000.1 239 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 276 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.503	227	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.84E-5	237	280	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.5E-8	237	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-11	237	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MAEELHAGIC EGTWWKSSKT MLSGFPSSSP TEIADLGISF GWATNMADDI EARSSNNKEK 60 HQQAADSHNN GSSVFIDSSL KMMDFDLSST PDCNQSFQLS CRQEPVAMDS ALLQGLLFEP 120 DAQAQQHSLN FNNRSINHMP AGATYGANAN GILSPPWPKL APFVRPSLPK QLPSSLPLPQ 180 SQVLLQTFEN KLNCPRPTIE TNTKQVRNLA SVMKKGSGEP PLKRPRIETP LPLPTFKVRK 240 EKLGDRITAL QQLVSPFGKT DTASVLHETI EYIKFLHDQV NVLSTPYVKQ AAVSIPQGID 300 HRLKDTEGSK QDLRSRGLCL VPISTTFTVA NETTADFWTP AFVGTLSFYT *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MAEELHAGIC EGTWWKSSKT MLSGFPSSSP TEIADLGISF GWATNMADDI EARSSNNKEK  60
HQQAADSHNN GSSVFIDSSL KMMDFDLSST PDCNQSFQLS CRQEPVAMDS ALLQGLLFEP  120
DAQAQQHSLN FNNRSINHMP AGATYGANAN GILSPPWPKL APFVRPSLPK QLPSSLPLPQ  180
SQVLLQTFEN KLNCPRPTIE TNTKQVRNLA SVMKKGSGEP PLKRPRIETP LPLPTFKVRK  240
EKLGDRITAL QQLVSPFGKT DTASVLHETI EYIKFLHDQV NVLSTPYVKQ AAVSIPQGID  300
HRLKDTEGSK QDLRSRGLCL VPISTTFTVA NETTADFWTP AFVGTLSFYT *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012484674.1	0.0	PREDICTED: transcription factor bHLH112-like isoform X1
TrEMBL	A0A0D2NNQ9	0.0	A0A0D2NNQ9_GOSRA; Uncharacterized protein
STRING	Gorai.006G085000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24650	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	3e-52	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.006G085000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]