PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 203aa MW: 22592.4 Da PI: 6.5091

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G245700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.2	3.5e-13	62	119	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++ +r+++NRe+ArrsR RK++ ++ L v +L++eN++ +++ ++ + ++++e Gorai.005G245700.1 62 RKRKRMISNRESARRSRMRKQKHLDDLMAQVSQLQNENHQILTTVSITTQRYLNVEAE 119 5789***********************************9998888777777766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-18	58	122	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.9E-11	60	106	No hit	No description
PROSITE profile	PS50217	10.473	60	123	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.5E-13	62	114	No hit	No description
Pfam	PF00170	4.9E-11	62	106	IPR004827	Basic-leucine zipper domain
CDD	cd14702	4.18E-22	63	113	No hit	No description
PROSITE pattern	PS00036	0	65	80	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009845	Biological Process	seed germination
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MSPILSEIFF SGFMINSTFI RRTQLVQSFS VVFLYCGTSS GSSTMVTNSG SDEDLQALMN 60 ERKRKRMISN RESARRSRMR KQKHLDDLMA QVSQLQNENH QILTTVSITT QRYLNVEAEN 120 SVLRAQANEL SHRLQSLNDI IDSLNGCNNN IGGADGGGDC GGFNVATIGF NEMVDHSFIN 180 PFNLAYLNQP IMASADNNMF QY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	82	RKRKRMISNRESARRSRMRKQK
2	74	81	RRSRMRKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269\|PubMed:23461773}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269\|PubMed:23461773}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00239	DAP	Transfer from AT1G75390	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480362.1	1e-120	PREDICTED: ocs element-binding factor 1-like
Swissprot	C0Z2L5	4e-47	BZP44_ARATH; bZIP transcription factor 44
TrEMBL	A0A0D2NI13	1e-147	A0A0D2NI13_GOSRA; Uncharacterized protein
STRING	Gorai.005G245700.1	1e-148	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM501	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	1e-46	basic leucine-zipper 44

Link Out ? help Back to Top
Phytozome	Gorai.005G245700.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]