PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 347aa MW: 38364.8 Da PI: 5.1899

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G226000.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	47.3	2.9e-15	182	218	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg + Tp +Rrgp g++tLCnaCGl+++ kg+ Gorai.005G226000.3 182 CQHCGINEklTPAMRRGPAGPRTLCNACGLMWANKGT 218 **********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	3.5E-6	50	85	IPR010399	Tify domain
PROSITE profile	PS51320	12.258	50	85	IPR010399	Tify domain
Pfam	PF06200	3.4E-9	54	84	IPR010399	Tify domain
PROSITE profile	PS51017	12.818	116	158	IPR010402	CCT domain
Pfam	PF06203	5.9E-15	116	158	IPR010402	CCT domain
SMART	SM00401	4.1E-9	176	229	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.8E-14	180	222	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	3.61E-11	180	230	No hit	No description
CDD	cd00202	1.47E-14	181	228	No hit	No description
Pfam	PF00320	6.4E-13	182	218	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	182	209	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MVDGVAMDTV NQRGLLGRPY GYLHDDGGFE RKDIKGAHKA VMNGVMSSVQ PTRTSELTIA 60 FEGEVYVFPA VTSEKVQAVL LLLGGCDTSI NVPSSEFLLQ EKVVGDSSRG SKISRRIASL 120 VRFREKRKER CFEKKIRYTC RKEVAQRMHR KNGQFASVKD SNSGEGSCDQ SDDTPDSVLR 180 SCQHCGINEK LTPAMRRGPA GPRTLCNACG LMWANKGTLR DLRKGGRSTH FDSKELETPT 240 DIKPSTLEPE NSFANNDEQG SPQEKKPVPM DSENHLITSN EQEFAQNSHP FLIHVENSSV 300 NLDNEDIQET LEELADASGS DFEIPSHFDE QVDIDDSNIV TLWPGT*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MVDGVAMDTV NQRGLLGRPY GYLHDDGGFE RKDIKGAHKA VMNGVMSSVQ PTRTSELTIA  60
FEGEVYVFPA VTSEKVQAVL LLLGGCDTSI NVPSSEFLLQ EKVVGDSSRG SKISRRIASL  120
VRFREKRKER CFEKKIRYTC RKEVAQRMHR KNGQFASVKD SNSGEGSCDQ SDDTPDSVLR  180
SCQHCGINEK LTPAMRRGPA GPRTLCNACG LMWANKGTLR DLRKGGRSTH FDSKELETPT  240
DIKPSTLEPE NSFANNDEQG SPQEKKPVPM DSENHLITSN EQEFAQNSHP FLIHVENSSV  300
NLDNEDIQET LEELADASGS DFEIPSHFDE QVDIDDSNIV TLWPGT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480063.1	0.0	PREDICTED: GATA transcription factor 28-like isoform X1
TrEMBL	A0A0D2NH43	0.0	A0A0D2NH43_GOSRA; Uncharacterized protein
STRING	Gorai.005G226000.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.1	2e-47	ZIM-like 1

Link Out ? help Back to Top
Phytozome	Gorai.005G226000.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]