PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G142100.1
Common NameB456_005G142100, LOC105794204
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 354aa    MW: 39695.8 Da    PI: 6.9313
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G142100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.93.5e-201053245
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        + en   rq t++kR++gi+KKA+ELS+LCd+e+ +++fs+t+k
  Gorai.005G142100.1 10 KLENPNGRQATYAKRKHGIMKKANELSILCDVEIVLLMFSPTNK 53
                        5689999**********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.521153IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-28160IPR002100Transcription factor, MADS-box
CDDcd002661.26E-24282No hitNo description
SuperFamilySSF554553.27E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-16323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-181154IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGRVKLKIKK LENPNGRQAT YAKRKHGIMK KANELSILCD VEIVLLMFSP TNKPSLCIGK  60
RSSLEEIIEK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIHEFLGSS TQTIEDLTNQ  120
ARLLQTRLSE VHRRLSCWTN VDKINNVEQL GQMEDSLKEY LNQIQAHKEN VGKQQQLLSL  180
ECTSQFQNEM QVPYRMGLEQ QLQTLSWLPN QDSRHIALSD DPNLIPHRDV ECSASSSFGS  240
YSGYFGTGKS SELSSSGQEN SILNDLSGNG SLQLQLGGQC PLFSYNLNIL NDPKFPPVAE  300
MNFNETPADY QVNGALQGPR TGFDTTPGSW PSTSGSCAVT MFDEPLYTRL QQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-13192190MEF2 CHIMERA
6byy_B2e-13192190MEF2 CHIMERA
6byy_C2e-13192190MEF2 CHIMERA
6byy_D2e-13192190MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364480.0HM236448.1 Gossypium hirsutum MADS32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478705.10.0PREDICTED: MADS-box transcription factor 25-like isoform X1
SwissprotQ1PFA41e-119AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A0D2RLA90.0A0A0D2RLA9_GOSRA; Uncharacterized protein
STRINGGorai.005G142100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.21e-101AGAMOUS-like 30
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]