PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G142100.1 | ||||||||
Common Name | B456_005G142100, LOC105794204 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 354aa MW: 39695.8 Da PI: 6.9313 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.9 | 3.5e-20 | 10 | 53 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en rq t++kR++gi+KKA+ELS+LCd+e+ +++fs+t+k Gorai.005G142100.1 10 KLENPNGRQATYAKRKHGIMKKANELSILCDVEIVLLMFSPTNK 53 5689999**********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.521 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-28 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.26E-24 | 2 | 82 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-25 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-16 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-18 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-16 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-16 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MGRVKLKIKK LENPNGRQAT YAKRKHGIMK KANELSILCD VEIVLLMFSP TNKPSLCIGK 60 RSSLEEIIEK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIHEFLGSS TQTIEDLTNQ 120 ARLLQTRLSE VHRRLSCWTN VDKINNVEQL GQMEDSLKEY LNQIQAHKEN VGKQQQLLSL 180 ECTSQFQNEM QVPYRMGLEQ QLQTLSWLPN QDSRHIALSD DPNLIPHRDV ECSASSSFGS 240 YSGYFGTGKS SELSSSGQEN SILNDLSGNG SLQLQLGGQC PLFSYNLNIL NDPKFPPVAE 300 MNFNETPADY QVNGALQGPR TGFDTTPGSW PSTSGSCAVT MFDEPLYTRL QQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_B | 2e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_C | 2e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
6byy_D | 2e-13 | 1 | 92 | 1 | 90 | MEF2 CHIMERA |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM236448 | 0.0 | HM236448.1 Gossypium hirsutum MADS32 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012478705.1 | 0.0 | PREDICTED: MADS-box transcription factor 25-like isoform X1 | ||||
Swissprot | Q1PFA4 | 1e-119 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A0D2RLA9 | 0.0 | A0A0D2RLA9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G142100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8754 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 1e-101 | AGAMOUS-like 30 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G142100.1 |
Entrez Gene | 105794204 |
Publications ? help Back to Top | |||
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