PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G274200.1
Common NameB456_004G274200, LOC105792836
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 352aa    MW: 40649.6 Da    PI: 4.8909
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G274200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-09282328652
                         S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                         +++k q+++Le+++++++ p+ +++  + + ++L+ ++V  WF  +R
  Gorai.004G274200.1 282 RLKKVQIDTLEKVYRRSKRPTNTMISSIVQVTNLPRKRVVKWFEDKR 328
                         57899***************************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.944274334IPR001356Homeobox domain
SuperFamilySSF466893.76E-9277340IPR009057Homeodomain-like
CDDcd000863.81E-6277328No hitNo description
SMARTSM003897.8E-5280338IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-8282334IPR009057Homeodomain-like
PfamPF000464.3E-7282328IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MASALSVNSS ISVRILQSSY RGRVSVAQPR YFNLLPAPQS RRRYTVAYSR RRNNQPASTE  60
KKKRLKKEKK KGLVEKEEED FEGDPFEALF KQLEEDLKND NPDMEDDDDE GDEINEEDID  120
RLANELAEAF GDFDFEGFSS APNDAKEEVE DDGEEDGNDD EVEERPVKLK NWQLRRLAAA  180
LKVGRRKTSI KTLAAELCLD RAVVLELLRE PPPELLMISA TLPDEPVKKE PEPESEPEPE  240
PMPETKHVET LAFETTMDNV KHEPKVKEPI HVMQQRWSAQ KRLKKVQIDT LEKVYRRSKR  300
PTNTMISSIV QVTNLPRKRV VKWFEDKRNE DGVPEHRQPY RRYGSETVFS D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14065RRRYTVAYSRRRNNQPASTEKKKRLK
24963RRRNNQPASTEKKKR
36070KKKRLKKEKKK
Functional Description ? help Back to Top
Source Description
UniProtMay modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5875561e-107JX587556.1 Gossypium hirsutum clone NBRI_GE21695 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477095.10.0PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
SwissprotQ8H0V57e-79OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A0D2PJA70.0A0A0D2PJA7_GOSRA; Uncharacterized protein
STRINGGorai.004G274200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.11e-59overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. García-Andrade J,Ramírez V,López A,Vera P
    Mediated plastid RNA editing in plant immunity.
    PLoS Pathog., 2013. 9(10): p. e1003713
    [PMID:24204264]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
    Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
    Plant J., 2014. 78(2): p. 227-40
    [PMID:24506441]