PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G252700.1

Common Name

B456_004G252700, LOC105792643

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 480aa MW: 52122.4 Da PI: 6.3083

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G252700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.3e-39	92	151	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ Gorai.004G252700.1 92 PDKILPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 151 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-30	85	149	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.4E-32	94	150	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	96	150	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	98	134	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MNGGDPAFKL FGRKIPVLEP QIHAGDTCGE ETNPGTETSQ TNTSGKPDKS IRVENGKEEV 60 QTCMKLDEVQ INPKDEQPET NRTDQEIVFK KPDKILPCPR CNSLDTKFCY FNNYNVNQPR 120 HFCKNCQRYW TAGGTMRNVP IGAGRRKNKH LTSQYRQIIV SSDGVPMTQI ETPDSANQLV 180 SPCESTAAFK PSMGNGTVLK FGAEAPLCES METALSLGEQ KRCVETGMVS CGETRKEPSS 240 CGSSVAPCSI RGNEFPGHVM QKERIGVTGP NDRNTQHLPQ CYPVPPWVFP WNQSPNNVAP 300 VAAVQCSSDR ISAPNSSTSN VVPQWCPTPL VAVPGFCPPN IPVQFVPAYW GCMPLWTTSG 360 GNVSFSGSNG CLSPSSSTSN SSCSGNVSPT LGKHSREANF VEEEKPEKCI LVPKTLRMDD 420 PNEASRSPIW ATLGIRPAQK DPLQGKDFDS FESKAEGQDH IPDGNHILEA NPAPFSEST*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MNGGDPAFKL FGRKIPVLEP QIHAGDTCGE ETNPGTETSQ TNTSGKPDKS IRVENGKEEV  60
QTCMKLDEVQ INPKDEQPET NRTDQEIVFK KPDKILPCPR CNSLDTKFCY FNNYNVNQPR  120
HFCKNCQRYW TAGGTMRNVP IGAGRRKNKH LTSQYRQIIV SSDGVPMTQI ETPDSANQLV  180
SPCESTAAFK PSMGNGTVLK FGAEAPLCES METALSLGEQ KRCVETGMVS CGETRKEPSS  240
CGSSVAPCSI RGNEFPGHVM QKERIGVTGP NDRNTQHLPQ CYPVPPWVFP WNQSPNNVAP  300
VAAVQCSSDR ISAPNSSTSN VVPQWCPTPL VAVPGFCPPN IPVQFVPAYW GCMPLWTTSG  360
GNVSFSGSNG CLSPSSSTSN SSCSGNVSPT LGKHSREANF VEEEKPEKCI LVPKTLRMDD  420
PNEASRSPIW ATLGIRPAQK DPLQGKDFDS FESKAEGQDH IPDGNHILEA NPAPFSEST*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476759.1	0.0	PREDICTED: cyclic dof factor 2-like
TrEMBL	A0A0D2PI72	0.0	A0A0D2PI72_GOSRA; Uncharacterized protein
STRING	Gorai.004G252700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15591	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-61	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Gorai.004G252700.1
Entrez Gene	105792643

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]