PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G199500.1 | ||||||||
Common Name | B456_004G199500, LOC105792083 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 293aa MW: 32850.9 Da PI: 10.121 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.5 | 8.5e-31 | 223 | 279 | 3 | 58 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 D ++WrKYGqK++kgs++prsYY+C+s+ gCp++k+ver+ edp+++++tYeg+H+h Gorai.004G199500.1 223 DDHSWRKYGQKPIKGSPYPRSYYKCSSTrGCPARKHVERCLEDPSMLVVTYEGDHKH 279 99************************999***************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.4E-16 | 180 | 219 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.8E-32 | 209 | 280 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.943 | 216 | 279 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-26 | 218 | 279 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-36 | 221 | 281 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 223 | 279 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MNPRWDLKVH EVAESSFRRA NHLFSCICDG SQKRSNQEIS LMAQDTVNGF RKLLSLLDGS 60 MQSECKRIRR GPLPKSNNVN PAELMDSPSF ASQSSICKPS QPHILGQLVS PQFNQSNTRL 120 IPRNVVVLPN LIMGLHHSST LPTMMPIFDK KLIPWSSSEI VVPQDESCML LSKRKIGVES 180 EEASTKCAAS TGGCHCSKRR KLRIRKTIRV PAISNKPSDI PPDDHSWRKY GQKPIKGSPY 240 PRSYYKCSST RGCPARKHVE RCLEDPSMLV VTYEGDHKHL RITFQSPSNV MV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-20 | 219 | 279 | 12 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669796 | 0.0 | KF669796.1 Gossypium hirsutum WRKY transcription factor 28 (WRKY28) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012475934.1 | 0.0 | PREDICTED: probable WRKY transcription factor 17 isoform X1 | ||||
Refseq | XP_012475935.1 | 0.0 | PREDICTED: probable WRKY transcription factor 17 isoform X1 | ||||
Refseq | XP_012475936.1 | 0.0 | PREDICTED: probable WRKY transcription factor 17 isoform X1 | ||||
TrEMBL | A0A0D2S2Y1 | 0.0 | A0A0D2S2Y1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G199500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20136 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 1e-45 | WRKY DNA-binding protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G199500.1 |
Entrez Gene | 105792083 |
Publications ? help Back to Top | |||
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