PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.004G152400.1 | ||||||||
Common Name | B456_004G152400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 99aa MW: 11198.9 Da PI: 10.3868 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21 | 5.8e-07 | 70 | 95 | 6 | 30 |
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 ++Er RR +i +++ +L+el+P+ + Gorai.004G152400.1 70 RIAERVRRTQISDRIRKLQELVPNmD 95 579********************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.388 | 64 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-6 | 67 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-5 | 69 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MDVSPSIKRA SELDTQFPLT KFHSQLKGEP SDQISGGISN LIDVDMEKLL EDSVPCRVRT 60 KRGCATHPRR IAERVRRTQI SDRIRKLQEL VPNMDKAR* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012475095.1 | 1e-65 | PREDICTED: transcription factor bHLH80-like, partial | ||||
Swissprot | Q9C8P8 | 3e-36 | BH080_ARATH; Transcription factor bHLH80 | ||||
Swissprot | Q9M0R0 | 3e-36 | BH081_ARATH; Transcription factor bHLH81 | ||||
TrEMBL | A0A0D2R573 | 5e-65 | A0A0D2R573_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.004G152400.1 | 8e-66 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5104 | 25 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 1e-38 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.004G152400.1 |
Publications ? help Back to Top | |||
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