PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G128200.2
Common NameB456_004G128200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 303aa    MW: 33804.4 Da    PI: 9.7897
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G128200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.93e-31290185
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
                        f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ 
  Gorai.004G128200.2  2 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRG 90
                        89***************************966778999*************************************************54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-391107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-27189No hitNo description
SuperFamilySSF1019362.62E-29190IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-212103IPR003340B3 DNA binding domain
PROSITE profilePS5086314.8042107IPR003340B3 DNA binding domain
PfamPF023622.1E-28292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL DSSTNEKGLL LNFEDRNGKP WRFRYSYWNS  60
SQSYVMTKGW SRFVKDKKLD AGDIVSFQRG AGEVGKDRFF IDSKRKPDAP TLVSFHPHQH  120
YFSLGRSIPW NPLLMRPPPT GRDHLYLSPV NPINRRNSYY GGYPTGSNVV NPGDTVGSLF  180
YLRSAVGSGA PQMGMTQRQQ QGGVVEPIVF DSVPVVQSKA APKRMRLFGV NMECPMPESD  240
ECEMLTTSTL AHATMAPQHP DQPPSSSQHP LQLRLYNGTP LPPTDFLNAN KGKASLSFDL  300
DT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-6111077114B3 domain-containing transcription factor NGA1
5os9_B3e-6111077114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474749.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2
TrEMBLA0A0D2QWV60.0A0A0D2QWV6_GOSRA; Uncharacterized protein
STRINGGorai.004G128200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.19e-73B3 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]