PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G125900.1

Common Name

B456_004G125900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 484aa MW: 53931.5 Da PI: 5.0205

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G125900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.3	3.6e-54	9	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp GfrF+Ptdeel+++yL++k++gk++++ evi+e+d++k+ePwdLp+ ++++++ ew+fF++ d+ky++g+r nrat++gyWkatgkd Gorai.004G125900.1 9 LPIGFRFRPTDEELIHFYLRAKINGKRNDEVEVIREIDVCKCEPWDLPHmsAIQTRDPEWFFFCPLDRKYPNGNRLNRATEAGYWKATGKD 99 699**********************9999*************4347777888***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++s +++l+g+kk+Lvfy+grap+g++t+Wvmheyr Gorai.004G125900.1 100 RKIKS-GSSLIGMKKSLVFYTGRAPRGKRTNWVMHEYRT 137 *.99***************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-59	4	160	IPR003441	NAC domain
PROSITE profile	PS51005	57.154	9	160	IPR003441	NAC domain
Pfam	PF02365	3.9E-27	10	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MAVLSLNSLP IGFRFRPTDE ELIHFYLRAK INGKRNDEVE VIREIDVCKC EPWDLPHMSA 60 IQTRDPEWFF FCPLDRKYPN GNRLNRATEA GYWKATGKDR KIKSGSSLIG MKKSLVFYTG 120 RAPRGKRTNW VMHEYRTTLI ELDGTKPGQN PFVICRLFKK QDESIEDTNG DEVDVSSPTE 180 DMQSELEGPE DSPALEGVAQ PKFPHNNGTC SGGLPNEVVS NAVPPMLECN IVDSKAYSVT 240 GQVAEIVTDK VDQVGEALNH FYDPMVEPPD CKFFSPLRSQ VEAEQAPWMF HQVGSSLSAV 300 EFEHETNQND ASISDFLNSI LNNSDDYYSV DSSSQQYSAN ESETPKTMAV VEDGRIRSEQ 360 DAEVAQVLMI GSQLGREIAD KGTPLEIKAT AQDCTIPINK DIVLNSKEEP SNHVTTTCNL 420 DNAITGIRIR PHAAQSQTNI KNSVTQGYAP RRIRLQCKLQ VGTYYSEGKK DGSKPVVTKV 480 RNL*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MAVLSLNSLP IGFRFRPTDE ELIHFYLRAK INGKRNDEVE VIREIDVCKC EPWDLPHMSA  60
IQTRDPEWFF FCPLDRKYPN GNRLNRATEA GYWKATGKDR KIKSGSSLIG MKKSLVFYTG  120
RAPRGKRTNW VMHEYRTTLI ELDGTKPGQN PFVICRLFKK QDESIEDTNG DEVDVSSPTE  180
DMQSELEGPE DSPALEGVAQ PKFPHNNGTC SGGLPNEVVS NAVPPMLECN IVDSKAYSVT  240
GQVAEIVTDK VDQVGEALNH FYDPMVEPPD CKFFSPLRSQ VEAEQAPWMF HQVGSSLSAV  300
EFEHETNQND ASISDFLNSI LNNSDDYYSV DSSSQQYSAN ESETPKTMAV VEDGRIRSEQ  360
DAEVAQVLMI GSQLGREIAD KGTPLEIKAT AQDCTIPINK DIVLNSKEEP SNHVTTTCNL  420
DNAITGIRIR PHAAQSQTNI KNSVTQGYAP RRIRLQCKLQ VGTYYSEGKK DGSKPVVTKV  480
RNL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-43	4	164	12	169	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-43	4	164	12	169	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-43	4	164	12	169	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-43	4	164	12	169	NO APICAL MERISTEM PROTEIN
3swm_A	2e-43	4	164	15	172	NAC domain-containing protein 19
3swm_B	2e-43	4	164	15	172	NAC domain-containing protein 19
3swm_C	2e-43	4	164	15	172	NAC domain-containing protein 19
3swm_D	2e-43	4	164	15	172	NAC domain-containing protein 19
3swp_A	2e-43	4	164	15	172	NAC domain-containing protein 19
3swp_B	2e-43	4	164	15	172	NAC domain-containing protein 19
3swp_C	2e-43	4	164	15	172	NAC domain-containing protein 19
3swp_D	2e-43	4	164	15	172	NAC domain-containing protein 19
4dul_A	2e-43	4	164	12	169	NAC domain-containing protein 19
4dul_B	2e-43	4	164	12	169	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012474699.1	0.0	PREDICTED: NAC domain-containing protein 62
TrEMBL	A0A0D2R3M4	0.0	A0A0D2R3M4_GOSRA; Uncharacterized protein
STRING	Gorai.004G125900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2416	28	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	8e-93	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Gorai.004G125900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]