PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G076900.1
Common NameB456_004G076900, LOC105790686
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 363aa    MW: 41824.8 Da    PI: 5.5396
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G076900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35471392103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+++i++d++++ ++sws+ g+sfvv+d++ f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+
  Gorai.004G076900.1  47 FLTKTFDIVDDPSTNYIVSWSRGGSSFVVWDPHAFSTNLLPRYFKHNNFSSFVRQLNTYGFRKTDPDK---------WEFANEGFLRGHKH 128
                         9***************************************************************9998.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Gorai.004G076900.1 129 LLKNIRRRKTT 139
                         ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-3442136IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.9E-3843136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-6043136IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.8E-3247136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-194770IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNPYFPVKEE YPNSSYSQSD DDPPLMMMGP PPPQPMESLR DSGPPPFLTK TFDIVDDPST  60
NYIVSWSRGG SSFVVWDPHA FSTNLLPRYF KHNNFSSFVR QLNTYGFRKT DPDKWEFANE  120
GFLRGHKHLL KNIRRRKTTS QPPPSQQPLG PCVEVGRFGV DGEVGRLKRD KQVLMMELVK  180
LRQQQQSTRA YIEAMEERLQ GTEKKQQQMM SFLARAMQNP AFLRQLMQQK EKRKELEEAM  240
SKKRRRPIDQ RHVGQSSRGS EGINPVKTEP PEYGEYGYQV TELEALALEM QGYGRARREQ  300
EEPQDELQHG HGHDRELDEG FWEELLNERF EGELDIPEGG EGEDEDVNVL ADRLGYLGSS  360
PK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-254213915123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231245KRKELEEAMSKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024500.0KJ702450.1 Gossypium hirsutum heat shock transcription factor (HSF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473864.10.0PREDICTED: heat stress transcription factor A-7a-like
SwissprotQ9LUH81e-127HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0D2QTK20.0A0A0D2QTK2_GOSRA; Uncharacterized protein
STRINGGorai.004G076900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-123heat shock transcription factor A6B
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]