PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G076800.1
Common NameB456_004G076800, LOC105790685
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 445aa    MW: 48923.9 Da    PI: 9.0784
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G076800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-0578100123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C+k F r  nL+ H r H
  Gorai.004G076800.1  78 FVCEVCNKGFQRDQNLQLHRRGH 100
                         89*******************88 PP
2zf-C2H211.40.001153175123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H + +
  Gorai.004G076800.1 153 WKCEKCSKIYAVQSDWKAHSKIC 175
                         58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.2E-677100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.3E-677100No hitNo description
PfamPF121718.3E-578100IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.02178100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9778100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.2E-4141174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.3E-6148173No hitNo description
SMARTSM00355170153173IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MFPAAISNST SLSEEASVSS ITRVQDLGSL NSIVSTISPH QPPQQNVVKK KRNLPGNPDP  60
DSEVIALSPK TLLSTNRFVC EVCNKGFQRD QNLQLHRRGH NLPWKLKQRS KEMKKKVYVC  120
PEPTCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK IYAVQSDWKA HSKICGTREY  180
RCDCGTLFSR KDSFITHRAF CDALAEESAR FSANHLPSGA AAAVSAANPR PSLRYFPSQS  240
NCDPSSLSPF QTHIAFQPWL EPTQTCNPNP NNNPLHIKPQ SYHFVPLFQE QAPPPPKACI  300
TSPYQNLLPV GNNTSSNVAM SATALLQKAA TVGVTATKIN NNNNNNNSNM ASYVSSDMFG  360
FGGGNMAAAW QKSSNHFTRD FLGLTGDQHQ HHGSGNGNAN VSMNMREVLT YAGGVELQQF  420
ERDHSLLKPQ GSGFDEPASE TWGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35149213367Zinc finger protein JACKDAW
5b3h_F1e-35149213367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473863.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotO227591e-121IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A0D2MV470.0A0A0D2MV47_GOSRA; Uncharacterized protein
STRINGGorai.004G076800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-121indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]