PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 439aa MW: 49552.3 Da PI: 9.9606

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G014700.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.8	9.1e-14	2	45	14	57
HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +Le+++++ r ps e+++++A ++gLte+q++ WF+ rR k+kk Gorai.004G014700.5 2 ALEKFYKELRFPSDEMKAQIALQVGLTEKQISSWFCHRRLKDKK 45 7*****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.171	1	46	IPR001356	Homeobox domain
SMART	SM00389	0.0017	1	50	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.8E-13	2	46	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-11	2	47	IPR009057	Homeodomain-like
Pfam	PF00046	1.9E-11	2	45	IPR001356	Homeobox domain
CDD	cd00086	2.17E-10	2	46	No hit	No description
PROSITE pattern	PS00027	0	21	44	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MALEKFYKEL RFPSDEMKAQ IALQVGLTEK QISSWFCHRR LKDKKRDEYV NGRLDHSSGI 60 IQDRGSGLRQ DSSGSIKERD YRNIDPREVE SGLISSQEFL ATDHVYDRRN HQNPYDACME 120 DTSSESSSSL QDMHFSENRG PYDTKLGQNG TITQINPRTT KNTVYKPSGY LKVKGESENP 180 AILAVKRQLG RYYIEDGPLL ATDFDLLPNG AFEFPSSKAV SEPVDVGDHP QQPRSPRISG 240 AMKQPNLNVV NEVNNSKTSS QDPYMENATF KTMYGLERRN KKSRHQLYKS HFNSFRGQNS 300 SSNIHRSSAE NAGTIDCKRS KASSKLAVER MRPDSFTNHP GPNVGKLDNE QEKTCLHDND 360 NRTYKAPKNK IPSKTSNSKR GCIESPGARM AKVEKLGGQR KPKKEYPVGV KTDPTNESRV 420 RLPSKSMSIS RDRDPLRQ*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MALEKFYKEL RFPSDEMKAQ IALQVGLTEK QISSWFCHRR LKDKKRDEYV NGRLDHSSGI  60
IQDRGSGLRQ DSSGSIKERD YRNIDPREVE SGLISSQEFL ATDHVYDRRN HQNPYDACME  120
DTSSESSSSL QDMHFSENRG PYDTKLGQNG TITQINPRTT KNTVYKPSGY LKVKGESENP  180
AILAVKRQLG RYYIEDGPLL ATDFDLLPNG AFEFPSSKAV SEPVDVGDHP QQPRSPRISG  240
AMKQPNLNVV NEVNNSKTSS QDPYMENATF KTMYGLERRN KKSRHQLYKS HFNSFRGQNS  300
SSNIHRSSAE NAGTIDCKRS KASSKLAVER MRPDSFTNHP GPNVGKLDNE QEKTCLHDND  360
NRTYKAPKNK IPSKTSNSKR GCIESPGARM AKVEKLGGQR KPKKEYPVGV KTDPTNESRV  420
RLPSKSMSIS RDRDPLRQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	46	RRLKDKKRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472928.1	0.0	PREDICTED: uncharacterized protein LOC105790068 isoform X3
TrEMBL	A0A0D2QXE8	0.0	A0A0D2QXE8_GOSRA; Uncharacterized protein
STRING	Gorai.004G014700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	9e-54	HB-other family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G014700.5

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]