PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 495aa MW: 55527.7 Da PI: 9.602

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G014700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.4e-18	18	73	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ q+ +Le+++++ r ps e+++++A ++gLte+q++ WF+ rR k+kk Gorai.004G014700.2 18 KKRTVKTPAQVMALEKFYKELRFPSDEMKAQIALQVGLTEKQISSWFCHRRLKDKK 73 8*****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-18	4	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.856	14	74	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-16	15	74	IPR009057	Homeodomain-like
SMART	SM00389	2.9E-14	16	78	IPR001356	Homeobox domain
Pfam	PF00046	8.6E-16	18	73	IPR001356	Homeobox domain
CDD	cd00086	1.62E-15	18	74	No hit	No description
PROSITE pattern	PS00027	0	49	72	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MEGEEQTEEN KVSLDVNKKR TVKTPAQVMA LEKFYKELRF PSDEMKAQIA LQVGLTEKQI 60 SSWFCHRRLK DKKRDEYVNG RLDHSSGIIQ DRGSGLRQDS SGSIKERDYR NIDPREVESG 120 LISSQEFLAT DHVYDRRNHQ NPYDACMEDT SSESSSSLQD MHFSENRGPY DTKLGQNGTI 180 TQINPRTTKN TVYKPSGYLK VKGESENPAI LAVKRQLGRY YIEDGPLLAT DFDLLPNGAF 240 EFPSSKAVSE PVDVGDHPQQ PRSPRISGAM KQPNLNVVNE VNNSKTSSQD PYMENATFKT 300 MYGLERRNKK SRHQLYKSHF NSFRGQNSSS NIHRSSAENA GTIDCKRSKA SSKLAVERMR 360 PDSFTNHPGP NVGKLDNEQE KTCLHDNDNR TYKAPKNKIP SKTSNSKRGC IESPGARMAK 420 VEKLGGQRKP KKEYPVGVKT DPTNESRVAK QVNVDFPRPR SPPSMNPTKS YRASMDVPSS 480 FSEDEVADTS SSSG*

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MEGEEQTEEN KVSLDVNKKR TVKTPAQVMA LEKFYKELRF PSDEMKAQIA LQVGLTEKQI  60
SSWFCHRRLK DKKRDEYVNG RLDHSSGIIQ DRGSGLRQDS SGSIKERDYR NIDPREVESG  120
LISSQEFLAT DHVYDRRNHQ NPYDACMEDT SSESSSSLQD MHFSENRGPY DTKLGQNGTI  180
TQINPRTTKN TVYKPSGYLK VKGESENPAI LAVKRQLGRY YIEDGPLLAT DFDLLPNGAF  240
EFPSSKAVSE PVDVGDHPQQ PRSPRISGAM KQPNLNVVNE VNNSKTSSQD PYMENATFKT  300
MYGLERRNKK SRHQLYKSHF NSFRGQNSSS NIHRSSAENA GTIDCKRSKA SSKLAVERMR  360
PDSFTNHPGP NVGKLDNEQE KTCLHDNDNR TYKAPKNKIP SKTSNSKRGC IESPGARMAK  420
VEKLGGQRKP KKEYPVGVKT DPTNESRVAK QVNVDFPRPR SPPSMNPTKS YRASMDVPSS  480
FSEDEVADTS SSSG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	74	RRLKDKKRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472927.1	0.0	PREDICTED: uncharacterized protein LOC105790068 isoform X2
TrEMBL	A0A0D2MS29	0.0	A0A0D2MS29_GOSRA; Uncharacterized protein
STRING	Gorai.004G014700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	4e-63	HB-other family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G014700.2
Entrez Gene	105790068

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]