PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G005200.1
Common NameB456_004G005200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 563aa    MW: 63634.3 Da    PI: 6.7081
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G005200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS324.52.2e-991985583374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         e L++cA+ v+ +d++ a+++L+ +++++s+ gd +qR a+ f++AL +rla+++  l+   +   +++++ +++l+a+ +++ ++P+ k+
  Gorai.004G005200.1 198 ESLTQCAQSVAVNDQRTANEMLKLIRQHSSEFGDGTQRSAHDFANALTTRLAGMGAPLFF--AHLLSNRTSAADALKAYGVYVLACPFKKM 286
                         689**************************************************9998884..4444444569******************* PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                         s++ aN+ I+e +e+++++HiiDf+i +G+QWp+L+q L+++++gp +lRiTg +s         +++ +  + ++e+++v f+ nv +ak
  Gorai.004G005200.1 287 SNFYANKRIMELAEKATTLHIIDFGICYGFQWPCLIQLLSAQAGGPSKLRITGSSS--------HNQVSDLQKGYCERFNVLFKCNV-IAK 368
                         *****************************************************999........5677777789************9.7** PP

                GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                         ++e+++leeL++ ++E+++Vn++++l++l+d++vs +s+r++vLkl++s++P+++++   +  +n++ F+ rf +al ++sa fd +ea++
  Gorai.004G005200.1 369 KWETIQLEELKITKDEVVVVNCMHRLKNLPDDTVSPTSARETVLKLIRSINPELFIHGVANGTYNAPFFFSRFRKALFHFSAQFDIFEATV 459
                         ******************************************************************************************* PP

                GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                         ++++ +r++ E+e+ gr+i+n+vaceg+er+er et+++W+ r  + GFk+vpl+++ +k++  +++  + + + v+ + +++++gWk+r 
  Gorai.004G005200.1 460 AQDDPQRMMFEKEIHGRDIMNLVACEGTERVERPETYKQWQVRTLRTGFKQVPLNQELVKKVMDMVQSSYHRDFVVDVDGHWMLQGWKGRI 550
                         **********************************************************************999****************** PP

                GRAS 367 LvsvSaWr 374
                         ++++S+W+
  Gorai.004G005200.1 551 IYALSCWK 558
                         *******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.398170538IPR005202Transcription factor GRAS
PfamPF035147.5E-97198558IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MYGFKFDHGS VPMPVYANHN LDNGSKESPI DSSSSSPSSG MSSDSPFPNA MLKYINQMLM  60
EEDLEEKTCM LQDCLALQAA ERSFYEVLCH NYPIPAGLNH YYPDDDCNSS KGTIERLGEG  120
SISPSVDVDK VRGRKNYQRE DVEEGRINKQ LALSLDDSEQ TEMFDDVLLC KGENEDSPKC  180
SLNGNSAQHR QIKRGFMESL TQCAQSVAVN DQRTANEMLK LIRQHSSEFG DGTQRSAHDF  240
ANALTTRLAG MGAPLFFAHL LSNRTSAADA LKAYGVYVLA CPFKKMSNFY ANKRIMELAE  300
KATTLHIIDF GICYGFQWPC LIQLLSAQAG GPSKLRITGS SSHNQVSDLQ KGYCERFNVL  360
FKCNVIAKKW ETIQLEELKI TKDEVVVVNC MHRLKNLPDD TVSPTSARET VLKLIRSINP  420
ELFIHGVANG TYNAPFFFSR FRKALFHFSA QFDIFEATVA QDDPQRMMFE KEIHGRDIMN  480
LVACEGTERV ERPETYKQWQ VRTLRTGFKQ VPLNQELVKK VMDMVQSSYH RDFVVDVDGH  540
WMLQGWKGRI IYALSCWKPV KN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-391965584375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743824.10.0PREDICTED: scarecrow-like protein 30
TrEMBLA0A0D2MRP20.0A0A0D2MRP2_GOSRA; Uncharacterized protein
STRINGGorai.004G005200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.11e-161GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]