PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G060900.1
Common NameB456_003G060900, LOC105788012
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 424aa    MW: 46060.3 Da    PI: 4.9124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G060900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.3e-08331371954
                         HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          r+RR+ri +++  L++l+P  +      K++ a++L +A +Y+k L
  Gorai.003G060900.1 331 ARQRRERISERIRVLQRLVPGgN------KMDTASMLDEAANYLKFL 371
                         69******************955......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.11322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-14327381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11330380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-5331371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-4344376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MDGLGWDELN SLPVWNSQPN DVEDSFLISN SNSSVYGDKI NLPDDIFVNS IQELQEAQPS  60
LVNPDADIVS EMVNPQPVPA SACGLTQEWC SSPLLNSSAY GLSSSNASVS DIGSMAVHSQ  120
VINGLPNGNA VAGATTTTAS SLETLECLLS ATNSNTDTSV EDDGLSMIFS DCKSLWNSVA  180
TTSTTAPVSS GESQSCSDQY TNNMKQSETN SGSSKRSNDY QSEFKVGLNR VYSNISAATS  240
GGFRLIDENP PKAKKPRLEK ALPSSSNINF QLPSSSASSS IDEPDPEAIA QMKEMIYRAA  300
AFRPVNLGME VMEKPKRKNV RISTDPQTVA ARQRRERISE RIRVLQRLVP GGNKMDTASM  360
LDEAANYLKF LRSQVKALEN LGHPMTAFNP SPINQSLPMQ THNFILLNHN YIRHPIDFKK  420
HYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331336RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470129.10.0PREDICTED: transcription factor bHLH87-like
RefseqXP_012470130.10.0PREDICTED: transcription factor bHLH87-like
TrEMBLA0A0D2QGA50.0A0A0D2QGA5_GOSRA; Uncharacterized protein
STRINGGorai.003G060900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.17e-62bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]