PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G034600.1

Common Name

B456_003G034600, LOC105787725

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 325aa MW: 36703.5 Da PI: 6.1813

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G034600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	146	192	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + kK +Ka++L A++Y+k+Lq Gorai.003G034600.1 146 DHVIAERKRREKLSQRFISLSALIPGL-----KKTDKASVLGDAIKYMKQLQ 192 6999*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.18	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-10	146	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	146	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.14E-12	147	196	No hit	No description
SuperFamily	SSF47459	7.2E-16	147	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-14	148	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEIISNKWIS EVEMVEDPTF FPQFTIPNMD YSFDDTNFQS FSSESYSSYP NINNGSSNIQ 60 AFHQVVDDNE FKRPMKQLKT DNNWNFSINE NIPPPPPPPK ASSSSSPSSH IISFHNSNPS 120 PAVSQQYYEI TKKVGSTTRT PLHAQDHVIA ERKRREKLSQ RFISLSALIP GLKKTDKASV 180 LGDAIKYMKQ LQEKVATLEE QAAKKATESV ILVKKSQIYL DDETSSSDEN FDSNQTNNKL 240 FPEIEARVSD KDVLIRIHCE KNKGFISNIM NEVEKLHLCV LNTNVLPFGQ ATLDITIVAQ 300 MEAEFSMTVK DLVKSLRLAL LKFM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	155	ERKRRE
2	151	156	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615207	0.0	JX615207.1 Gossypium hirsutum clone NBRI_GE59073 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469707.1	0.0	PREDICTED: transcription factor bHLH18-like
TrEMBL	A0A0D2QMR8	0.0	A0A0D2QMR8_GOSRA; Uncharacterized protein
STRING	Gorai.003G034600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-67	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.003G034600.1
Entrez Gene	105787725

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]