PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G020000.1 | ||||||||
Common Name | B456_003G020000, LOC105787585 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 576aa MW: 65131 Da PI: 9.0011 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.7 | 3.2e-16 | 23 | 113 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 fk+ d+ ++g l +p+kf+++ g++ + +l +sg++W+v+l +k+ g++++++GW eF + L+ g +vF++dg+s+f Gorai.003G020000.1 23 FKII-LQDTIQNGKLGVPRKFVKNQGNSMSS--PAMLSVPSGEVWKVEL--TKCNGKIWFENGWLEFSNHYSLDFGHLLVFRYDGNSNF-- 106 4544.468899999********666655444..69999***********..**********************************9999.. PP EEEEE-S CS B3 93 vvkvfrk 99 +v +f++ Gorai.003G020000.1 107 HVVIFDR 113 **99997 PP | |||||||
2 | B3 | 56.4 | 5.3e-18 | 240 | 329 | 2 | 87 |
EEE-..-HHHHT....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 2 fkvltpsdvlks....grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkld 85 + v+ ps+v+ s rl +p +f+++h +k+ +s +tl ++sg++W v+++ kk+ +y+lt GW Fv++n++++gD + F+l+ Gorai.003G020000.1 240 LVVMQPSYVGLShskgYRLAIPANFVRKHLMKELCS--ITLCNSSGKTWIVTFKNnqiGKKQTSYLLT-GWGTFVHDNNVRVGDACAFELI 327 5566666666554555899**********8887786..9999***********776645555557777.********************99 PP SS CS B3 86 gr 87 ++ Gorai.003G020000.1 328 NS 329 75 PP | |||||||
3 | B3 | 55.9 | 7.7e-18 | 400 | 493 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 vl ps++ +r+ +p fa+++ k +k+ +l ++g+sW v ++ + + + ++++GW++F ++n+L++gD++vF+l+ e Gorai.003G020000.1 400 VLQPSYS---RRMNIPVIFARKYLAK--MHKEAILLLSNGKSWPVIYCQhkiEST--GanAIFGSGWRRFSHDNKLEVGDSCVFELIMAAE 483 4433333...4678*********545..3457899999*********76543333..3569**************************8888 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++++v++++k Gorai.003G020000.1 484 TSMKVTIYKK 493 8899999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-22 | 17 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-22 | 18 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.19E-17 | 20 | 112 | No hit | No description |
PROSITE profile | PS50863 | 13.281 | 21 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-17 | 22 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-13 | 23 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-23 | 231 | 339 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.19E-23 | 234 | 341 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.10E-20 | 237 | 339 | No hit | No description |
SMART | SM01019 | 2.7E-14 | 239 | 342 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.507 | 243 | 342 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-15 | 251 | 331 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-24 | 388 | 494 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-22 | 390 | 493 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.916 | 394 | 494 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.09E-20 | 395 | 492 | No hit | No description |
SMART | SM01019 | 8.2E-17 | 396 | 494 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-16 | 400 | 493 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 576 aa Download sequence Send to blast |
MASSSYRQGN DHLKFISNSP HFFKIILQDT IQNGKLGVPR KFVKNQGNSM SSPAMLSVPS 60 GEVWKVELTK CNGKIWFENG WLEFSNHYSL DFGHLLVFRY DGNSNFHVVI FDRTATEILY 120 PYTRYNHIHR RSNIDKSKDD DSTPNLEDIS TSRKLREKSQ MPCPQPCKMM HSTNSAIKTE 180 IECDGKSEFL AQQIRYEGCP ARNGDKSTRH RVIQQLKPHE KDDALERASK TFKSENPFFL 240 VVMQPSYVGL SHSKGYRLAI PANFVRKHLM KELCSITLCN SSGKTWIVTF KNNQIGKKQT 300 SYLLTGWGTF VHDNNVRVGD ACAFELINSI EISFNVVIYQ GPHTKCYQSL SSTDIIRPMK 360 RKDQSYASPS GSETLTALEK AKAFQVASAF KSEYPFFISV LQPSYSRRMN IPVIFARKYL 420 AKMHKEAILL LSNGKSWPVI YCQHKIESTG ANAIFGSGWR RFSHDNKLEV GDSCVFELIM 480 AAETSMKVTI YKKQAVKDSS LADNSREKQV ELHESSVIGT KSALMNEKED TSNLLLDYNC 540 DASGETLDDI LISNLSSPGK ALEEASQSYQ SFTRE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-15 | 366 | 492 | 17 | 141 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-15 | 366 | 492 | 17 | 141 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX578202 | 1e-125 | JX578202.1 Gossypium hirsutum clone NBRI_GE10175 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012469504.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
TrEMBL | A0A0D2MI58 | 0.0 | A0A0D2MI58_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G020000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14219 | 7 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-41 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G020000.1 |
Entrez Gene | 105787585 |
Publications ? help Back to Top | |||
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