PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G011200.1
Common NameB456_003G011200, LOC105787494
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 168aa    MW: 18387.9 Da    PI: 6.9611
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G011200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.2e-08433534
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                         C+ +e+ +++ fC  ++  lC++C ++ H
  Gorai.003G011200.1  4 LCDACESAPAIVFCAADEAALCHSCDEKVH 33
                        6**************************998 PP
2zf-B_box18.44.5e-065395337
            zf-B_box  3 erkCpeHe....ekelqlfCedCqqllCedClleeHkg....H 37
                         ++C+ +e     + + ++Ce +++ lC +C +  H g    H
  Gorai.003G011200.1 53 VPRCDICEnapgMHTAFFYCEIDGSSLCLQCDVIVHVGgkktH 95
                        689****9555433499***************99995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
CDDcd000211.11E-6345No hitNo description
SMARTSM003361.4E-6447IPR000315B-box-type zinc finger
PfamPF006434.3E-6442IPR000315B-box-type zinc finger
SMARTSM003362.8E-651100IPR000315B-box-type zinc finger
CDDcd000213.41E-45488No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MRILCDACES APAIVFCAAD EAALCHSCDE KVHMCNKLAS RHVRVGLANP SAVPRCDICE  60
NAPGMHTAFF YCEIDGSSLC LQCDVIVHVG GKKTHGRYLL LRQRVEFPGD TSVEPSENGR  120
GQNQLTIGEN QQNHKVSPFK TDSTKMIDLN MKPPHRIHGQ ASNNQEQ*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469362.11e-123PREDICTED: B-box zinc finger protein 19-like isoform X1
RefseqXP_016692435.11e-123PREDICTED: B-box zinc finger protein 19-like isoform X1
SwissprotC0SVM51e-69BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0D2QLF41e-122A0A0D2QLF4_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JQA91e-122A0A1U8JQA9_GOSHI; B-box zinc finger protein 19-like isoform X1
STRINGGorai.003G011200.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.14e-72DBB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]