PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G211500.1
Common NameB456_002G211500, LOC105787326
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 321aa    MW: 35818.2 Da    PI: 7.5974
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G211500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-13151198355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Gorai.002G211500.1 151 QDHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 198
                         6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.069148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-17151214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-17152210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.19E-13153202No hitNo description
SMARTSM003534.3E-15154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEISSIRELP EFMSNPQGIM EDPNLFHQWH MNSLDELSFL PVTAAVDNYP DYSGAIGRPP  60
KQLKTNCWGG SCNASNLEAS VFSPDALSFA ASNHVINPMG ILKPKEEEAA SSKSMEPFPS  120
EILFSQNPFG TQNYVLKGCH GSKRLGISQT QDHIMAERKR REKLSQRFIA LSAIVPGLKK  180
MDKASVLGDA IKYLKQLQEK VKTLEEQTRK KSMESVVFVK KSHLSAADNI DDFHQPLPEI  240
EARFCDKSVL VRIHSEKRKG LPEKIMSELE KSHLTVINSN TVTFGSSALD ITIVAQMDIE  300
FCMTVKDLVK KLRSAFESLM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-15145201157Transcription factor MYC2
5gnj_B4e-15145201157Transcription factor MYC2
5gnj_E4e-15145201157Transcription factor MYC2
5gnj_F4e-15145201157Transcription factor MYC2
5gnj_G4e-15145201157Transcription factor MYC2
5gnj_I4e-15145201157Transcription factor MYC2
5gnj_M4e-15145201157Transcription factor MYC2
5gnj_N4e-15145201157Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161ERKRRE
2157162RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469147.10.0PREDICTED: transcription factor bHLH25-like
TrEMBLA0A0D2NQZ90.0A0A0D2NQZ9_GOSRA; Uncharacterized protein
STRINGGorai.002G211500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-58bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]