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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.002G157200.3 |
Common Name | B456_002G157200 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
E2F/DP |
Protein Properties |
Length: 484aa MW: 53471.1 Da PI: 5.8342 |
Description |
E2F/DP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.002G157200.3 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | E2F_TDP | 82.8 | 2.8e-26 | 168 | 232 | 1 | 70 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70
r+++sL+ lt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwk
Gorai.002G157200.3 168 RYDSSLGFLTKKFINLIKHAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNKIRWK 232
6899******************************...99..****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0005667 | Cellular Component | transcription factor complex |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 484 aa
Download sequence Send
to blast |
MSGVARASAC PTSPHPPPSM TAVSAPAPSA PSIVPPIRRH LAFASMKPPF VHPDDYHRFS 60 SNNSNNNLTT GNNTRGIIAD QEVEAIVVRS PKLKRKSTTV NKEVESSQWT TSPRVTSTAN 120 SPFQTPVSAK GGRINNRSKA SKANKSALQT PVSNASSPAP LTPAGSCRYD SSLGFLTKKF 180 INLIKHAEDG ILDLNKAAET LEVQKRRIYD ITNVLEGIGL IEKKLKNKIR WKPEADGDVS 240 LLQAEIENLT MKEHTLDDQI REMQERLRDL SENENNQRWL FVTEEDIKGL PCFRNETLIA 300 IKAPHGTTLE VPDPDEAVDY PQRRYRMILR STMGSIDVYL VSQFEKFEEV NGVEPPASVS 360 LASSSGSNEN QVELVNVERT RKEIEPQAVQ THQMDCDVNA SQESVGGMMR IVPSDIDNDA 420 DYWLLSDADV SITDMWKTDC VEWSGVDMLD ANFGMADIST PRPQSPPSRM VEVPSHAFHS 480 THR*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant in early S phase. Decreased expression during the passage into G2. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543}. |
Uniprot | TISSUE SPECIFICITY: Highly expressed in the shoot apical meristem, emerging leaf primordia, and vascular tissues of young leaf primordia. Expressed in flowers, in epidermis and cortex of hypocotyls, and at lower levels in leaves. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11889041}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |