PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 375aa MW: 40327.7 Da PI: 8.9896

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G156700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.2	2e-42	80	155	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dl++ak y++rhkvC +hska++v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ Gorai.002G156700.1 80 RCQVEGCKVDLTDAKAYYSRHKVCGMHSKAAKVIVAGLEQRFCQQCSRFHQLPEFDQRKRSCRRRLAGHNERRRKP 155 6*************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.3E-34	74	142	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.163	78	155	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.22E-40	79	159	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.6E-32	81	154	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MEMGSGSLTD SGGSSSNSST ESLNGLKFGQ KIYFEDTSAG GTGGGTTMGT PPKSGIGSSS 60 SSGSGKKARG GVVQGGQPPR CQVEGCKVDL TDAKAYYSRH KVCGMHSKAA KVIVAGLEQR 120 FCQQCSRFHQ LPEFDQRKRS CRRRLAGHNE RRRKPPPGSL LSSRYSRLSS SIIESSRGGS 180 FIMDFTSHPR LSRRDVWPTS RSSEHVPGNQ YTGTGWLHPH PWQNNSENPP PNLYRQELPG 240 GTAVPSGGIP PGECFTGVVD SNCALSLLSN QPWGSRNQGL TLGLNDMINS ELCSMSQPAM 300 PHGAVTNSYS NASWGFKGNH SCSRSQEMLP QIPEPINSQL TGGLQLSHQS RGQYMEHEPS 360 NADDTSMQHI HQSF*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MEMGSGSLTD SGGSSSNSST ESLNGLKFGQ KIYFEDTSAG GTGGGTTMGT PPKSGIGSSS  60
SSGSGKKARG GVVQGGQPPR CQVEGCKVDL TDAKAYYSRH KVCGMHSKAA KVIVAGLEQR  120
FCQQCSRFHQ LPEFDQRKRS CRRRLAGHNE RRRKPPPGSL LSSRYSRLSS SIIESSRGGS  180
FIMDFTSHPR LSRRDVWPTS RSSEHVPGNQ YTGTGWLHPH PWQNNSENPP PNLYRQELPG  240
GTAVPSGGIP PGECFTGVVD SNCALSLLSN QPWGSRNQGL TLGLNDMINS ELCSMSQPAM  300
PHGAVTNSYS NASWGFKGNH SCSRSQEMLP QIPEPINSQL TGGLQLSHQS RGQYMEHEPS  360
NADDTSMQHI HQSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	81	154	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	153	RKRSCRRRLAGHNERRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622312	0.0	KJ622312.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012467002.1	0.0	PREDICTED: squamosa promoter-binding-like protein 9
TrEMBL	A0A0D2R6U2	0.0	A0A0D2R6U2_GOSRA; Uncharacterized protein
STRING	Gorai.002G156700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2144	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	2e-51	squamosa promoter binding protein-like 9

Link Out ? help Back to Top
Phytozome	Gorai.002G156700.1
Entrez Gene	105785454

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]