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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.002G047200.1 |
| Common Name | B456_002G047200, LOC105776786 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
DBB |
| Protein Properties |
Length: 297aa MW: 32168.7 Da PI: 5.1814 |
| Description |
DBB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.002G047200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 21.4 | 5.1e-07 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
C+ +e e++ C ++ lC C +++H H++vpl
Gorai.002G047200.1 4 QCNVCEAAEAKVLCCADEAALCWACDEKIHAAnklaskHQRVPL 47
6******99*********************66899999999986 PP
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| 2 | zf-B_box | 28.6 | 2.9e-09 | 52 | 94 | 1 | 37 |
zf-B_box 1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
s+++kC+ ++e +fC +++ llC++C +++H H
Gorai.002G047200.1 52 SQMPKCDICQEASGFFFCLQDRALLCRKCDVAIHTAnpyvssH 94
689*********9*********************555556556 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009641 | Biological Process | shade avoidance |
| GO:0009658 | Biological Process | chloroplast organization |
| GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process |
| GO:0010099 | Biological Process | regulation of photomorphogenesis |
| GO:0015995 | Biological Process | chlorophyll biosynthetic process |
| GO:0016607 | Cellular Component | nuclear speck |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MRIQCNVCEA AEAKVLCCAD EAALCWACDE KIHAANKLAS KHQRVPLSSS SSQMPKCDIC 60
QEASGFFFCL QDRALLCRKC DVAIHTANPY VSSHQRFLLT GVKVGLETTD PGASSSDVKS 120
PSSEKTSETK TNSTSRRAAP MAFTGGYNEV LPSNLGDVNN ELTKVTYAGG STAGSIQSWQ 180
MDDIFGLTDF NQSYGYMDDG SSKADSGKRG DSDSSSILRS ADDEVDDDER LGQVPDSSWA 240
VPQLPSPPTA SGLYWPNDSR DQCDSVVFVP DICCSVMKNP FNSWRSGSNR KRRRHI*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
