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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.002G004200.2 |
Common Name | B456_002G004200, LOC105772861 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
DBB |
Protein Properties |
Length: 213aa MW: 23380.3 Da PI: 5.5576 |
Description |
DBB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.002G004200.2 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 22.4 | 2.6e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34
C+ +e+ +++fC ++ lC++C ++ H
Gorai.002G004200.2 4 LCDVCESAAAIIFCAADEAALCRSCDEKVH 33
7**************************998 PP
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2 | zf-B_box | 28.5 | 3.2e-09 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
+ ++C+ +e+ ++ ++Ce +++ lC +C + H g H
Gorai.002G004200.2 52 DVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91
5799**************************9995544455 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0007623 | Biological Process | circadian rhythm |
GO:0010100 | Biological Process | negative regulation of photomorphogenesis |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0005622 | Cellular Component | intracellular |
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MRTLCDVCES AAAIIFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SDVPRCDICE 60 NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPAH LEELGLQPVD 120 LNDVRKDQKW QPNFAGRENQ QNHRLSLVPA LDGNGDGDGK VGNKLIDLNT NPQRLHDQAS 180 TIQEQAMDVS SDNNHDSASV VPVGSFKREP DK*
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Functional Description ? help
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Source |
Description |
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |