PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G004200.1
Common NameB456_002G004200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 234aa    MW: 25650.8 Da    PI: 4.997
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G004200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.23e-07433534
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                         C+ +e+  +++fC  ++  lC++C ++ H
  Gorai.002G004200.1  4 LCDVCESAAAIIFCAADEAALCRSCDEKVH 33
                        7**************************998 PP
2zf-B_box28.33.7e-095291237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                        + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Gorai.002G004200.1 52 DVPRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91
                        5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
SMARTSM003361.7E-8147IPR000315B-box-type zinc finger
PfamPF006431.2E-5341IPR000315B-box-type zinc finger
CDDcd000217.52E-6345No hitNo description
PROSITE profilePS501198.9735196IPR000315B-box-type zinc finger
SMARTSM003368.4E-105196IPR000315B-box-type zinc finger
PfamPF006433.0E-75285IPR000315B-box-type zinc finger
CDDcd000214.26E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MRTLCDVCES AAAIIFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SDVPRCDICE  60
NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPAH LEELGLQPVD  120
PNDFPGDKPA HLEELGLQPV DLNDVRKDQK WQPNFAGREN QQNHRLSLVP ALDGNGDGDG  180
KVGNKLIDLN TNPQRLHDQA STIQEQAMDV SSDNNHDSAS VVPVGSFKRE PDK*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016715552.11e-171PREDICTED: B-box zinc finger protein 19-like isoform X2
SwissprotC0SVM52e-86BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0D2NG711e-171A0A0D2NG71_GOSRA; Uncharacterized protein
STRINGGorai.002G004200.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-68DBB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]