PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G251100.1 | ||||||||
Common Name | B456_001G251100, LOC105771723 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 199aa MW: 22234 Da PI: 6.8728 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.00011 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H+++H Gorai.001G251100.1 41 YTCAFCKREFRSAQALGGHMNVH 63 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.61E-6 | 38 | 67 | No hit | No description |
Pfam | PF13912 | 4.8E-6 | 41 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.032 | 41 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MERSDWSTSK MGKWEFNRLD LVELEGEQYS CCKSPWPPKF YTCAFCKREF RSAQALGGHM 60 NVHRKDRARL RLFSSWVLES QNPNKPNSNP NHPNPINSSS PSDDFSVYPH HSLLSPLFPT 120 PSSSVLTYGE NPKMSLNPQL GDLSQENTMT PFPAGVENLK VHAPNYKLEV GGVTGLDLVT 180 GFGDTKEVLD LDLRLGHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-12 | 36 | 63 | 2 | 29 | superman protein |
2l1o_A | 3e-12 | 36 | 63 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX580137 | 1e-53 | JX580137.1 Gossypium hirsutum clone NBRI_GE12506 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012448581.1 | 1e-146 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
Refseq | XP_012448584.1 | 1e-146 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A0D2QVQ3 | 1e-145 | A0A0D2QVQ3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G251100.1 | 1e-146 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9575 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 2e-22 | zinc finger protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G251100.1 |
Entrez Gene | 105771723 |
Publications ? help Back to Top | |||
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