PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.001G037800.1 | ||||||||
Common Name | B456_001G037800, LOC105774343 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 262aa MW: 29031.6 Da PI: 7.2043 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.3 | 1.8e-29 | 103 | 162 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ k ++fpr+Y+rC++a gCpvkkkv+r+ ed++++ tYeg+Hnhe Gorai.001G037800.1 103 VKDGFQWRKYGQKVTKHNPFPRAYFRCSMApGCPVKKKVQRCMEDKNFLMATYEGRHNHE 162 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-29 | 96 | 162 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.142 | 98 | 164 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.02E-26 | 99 | 163 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-33 | 103 | 163 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-24 | 104 | 162 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MDVPSSVKDK VEGVEAELEQ LQKENAALRL MLQVMSNKYK MLSEAYFRES NSQVPTICRG 60 LTRFDLCEDQ HSHKNILIPQ LQLAANSSQV FVETDPRDES HIVKDGFQWR KYGQKVTKHN 120 PFPRAYFRCS MAPGCPVKKK VQRCMEDKNF LMATYEGRHN HEVNPSIGQS LCSPTSSATT 180 SISGFPNSVL DNPLRSAITL DLNLSSENSS GNGNGNDDDY NNKRSMEDHV AASLAKDPSF 240 TLALAAAVAR SITEHPKPPT N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-22 | 102 | 165 | 13 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM438465 | 0.0 | KM438465.1 Gossypium aridum WRKY52 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012452306.1 | 0.0 | PREDICTED: WRKY transcription factor 18-like | ||||
TrEMBL | A0A0D2PU91 | 0.0 | A0A0D2PU91_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G037800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24693 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.2 | 2e-36 | WRKY DNA-binding protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.001G037800.1 |
Entrez Gene | 105774343 |
Publications ? help Back to Top | |||
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