PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G249900.1.p
Common NameGLYMA_20G249900, LOC100779050
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 320aa    MW: 35818.9 Da    PI: 6.3333
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G249900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.93.3e-2930124186
             trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                          rWt+qe+l+Li+++r+ e+++rrg+         + +p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++
  Glyma.20G249900.1.p  30 RWTRQEILVLIQGKRDAENKFRRGRtaglafgsgQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIRDETESFWVM 119
                          8**********************97778888888***********************************************999999*99 PP

             trihelix  82 fdqle 86 
                           ++l+
  Glyma.20G249900.1.p 120 RNDLR 124
                          99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.10E-1329103No hitNo description
Gene3DG3DSA:1.10.10.606.7E-53095IPR009057Homeodomain-like
PROSITE profilePS500906.5623096IPR017877Myb-like domain
PfamPF138372.7E-1330119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MALEQEVGQN RNTNGVDGGD EGGKAPRLPR WTRQEILVLI QGKRDAENKF RRGRTAGLAF  60
GSGQVEPKWA SVSSYCRKHG VNRGPVQCRK RWSNLAGDYK KIKEWESQIR DETESFWVMR  120
NDLRRERKLA GFFDKEVYDI LDSGSGPTTL ALSLSSSPPP TTTITTTTVP DDPPHLYDSN  180
RSAPGEDGLF SDFEQDEEKN PPSNKDIPAP IPISEKQYLR RCQAEGVTNE KLSTSNPEMG  240
STSQGERKRK RLTTDGEEET LQYQLIDVLE RNGKMLSAQL EAQNINFQLD REQRKDHASN  300
LVAVLDKLAD ALGKIADKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.381000.0root| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G249900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-142AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556587.10.0trihelix transcription factor ASR3
RefseqXP_028222752.10.0trihelix transcription factor ASR3-like
SwissprotQ8VZ201e-114ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A445FA870.0A0A445FA87_GLYSO; Trihelix transcription factor ASR3 isoform A
TrEMBLI1NJF90.0I1NJF9_SOYBN; Uncharacterized protein
STRINGGLYMA20G39410.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-103Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]