PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G235100.1.p | ||||||||
Common Name | GLYMA_20G235100, LOC100785295 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 530aa MW: 56754.2 Da PI: 8.715 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Glyma.20G235100.1.p 92 FICEICNKGFQRDQNLQLHRRGH 114 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0012 | 168 | 190 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Glyma.20G235100.1.p 168 WKCDKCSKKYAVQSDWKAHSKIC 190 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.33E-6 | 91 | 114 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 91 | 114 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 6.4E-5 | 92 | 114 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.845 | 92 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 133 | 163 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.8E-4 | 156 | 189 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.33E-6 | 163 | 188 | No hit | No description |
SMART | SM00355 | 150 | 168 | 188 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MSNITSCDSG SFSTENTRED AVVKQQPEIL GQFHSPHSHT STTTTTNNSN GSNTDSQSPA 60 PVKKKRNLPG NPDPSAEVIA LSPTTLMATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL 120 KQRTSTEIRK RVYVCPEPSC VHHNPARALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ 180 SDWKAHSKIC GTREYKCDCG TIFSRRDSFI THRAFCDALA EENNKANEGQ LPKIGPNLQC 240 QQIPNLVSSS LPINTNIVPN PQMGGTSEFN HADHKHPLSL PHELMPMPAQ KSFNNMAAGT 300 TVFTRSLSST SSPSLQLSSN MFEENGLHLA AGSPHMSATA LLQKAAQMGA TVTEKTFVTN 360 MAPPSFGVLQ QHHQQPNGQP FMNQYMHSGQ QQQDVNISAQ YNSFGANGMG GGSVGMNGVD 420 MFNAILDQSK ALSKIMEQNN RSSSGGPTNG GSNSSAINVA GSKGGSGDVM TLDFLGIGGG 480 GGGGGGGGDA HGNFYGGAQQ GETGAPDVVW RNWSSKNAGF ESFSATSSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-32 | 164 | 225 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 1e-32 | 164 | 225 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.31163 | 0.0 | cotyledon| flower| leaf| root| vegetative bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G235100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235335 | 0.0 | AC235335.1 Glycine max strain Williams 82 clone GM_WBb0083K09, complete sequence. | |||
GenBank | AC235386 | 0.0 | AC235386.1 Glycine max strain Williams 82 clone GM_WBb0115I18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003556511.1 | 0.0 | protein indeterminate-domain 2 | ||||
Refseq | XP_028221162.1 | 0.0 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like | ||||
Swissprot | Q9SCQ6 | 1e-118 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A445F9G1 | 0.0 | A0A445F9G1_GLYSO; Protein indeterminate-domain 2 | ||||
TrEMBL | I1NJ02 | 0.0 | I1NJ02_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G37900.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-104 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G235100.1.p |
Entrez Gene | 100785295 |
Publications ? help Back to Top | |||
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